Cyberinfrastructure for Network Science Center at Indiana University
CNS is a visualization research center at IU. Our projects cover a broad range of data analysis and visualization topics.
Bloomington, IN
Pinned Repositories
ccf-research-kaggle-2021
Supporting information page for the "Robust and generalizable segmentation of human functional tissue units" paper
cjobs
CJOBS
edx-learnertrajectorynetpipeline
Exploratory data analysis pipeline using edX event logs
generic_parser
Generic XML to DB insert statement parser, with Web of Science configuration files.
hra-literature
HRAlit v0.5
macroscope-kiosk
The Macroscope Kiosk is an application to access macroscopes from the Places & Spaces: Mapping Science exhibit
make-a-vis
MaV: An online tool for creating visualizations
ngx-dino
A visualization framework and component library for Angular 7+
nwb
The CNS tool suite
xmacroscope
The xMacroscope provides a way for museum visitors to build and interpret visualizations that use data generated by the visitors during their exhibit experience.
Cyberinfrastructure for Network Science Center at Indiana University's Repositories
cns-iu/hra-node-dist-vis
HRA Node Distance Visualization Web Component
cns-iu/hra-scrollytelling
Learn about the HRA through scrollytelling!
cns-iu/hra-corridor-generation-gpu
GPU-powered API to generate corridors (GLB) for RUI locations
cns-iu/hra-ftu-vccf-supporting-information
Supporting information page for the "Function Tissue Units in the Human Reference Atlas" paper
cns-iu/hra-organ-gallery-in-vr
HRA Organ Gallery in VR
cns-iu/hra-sennet-hoa-kaggle-2024
Code for "Vasculature segmentation in 3D hierarchical phase-contrast tomography images of human kidneys"
cns-iu/scimaps
SciMaps website
cns-iu/hra-cell-embeddings
A repo to capture cell embedding visualizations
cns-iu/hra-construction-usage-supporting-information
Supporting information page for the "Human BioMolecular Atlas Program (HuBMAP): 3D Reference Atlas Construction and Usage" paper
cns-iu/hra-vccf-cell-distance-visualizations
HRA VCCF cell distance visualizations extended to other organs, based on work on skin data.
cns-iu/macroscope-kiosk
The Macroscope Kiosk is an application to access macroscopes from the Places & Spaces: Mapping Science exhibit
cns-iu/a2agc-dataset
Advanced Analytics for IU’s Addictions Grand Challenge (A2AGC)
cns-iu/hra-3d-cell-generation-api
API to generate 3D Cells inside Anatomical Structures
cns-iu/hra-4dn-3d-prototyping
A repo to hold code for playing with 4DN data
cns-iu/hra-amap
HRA-AMAP: Bidirectional Projections Between Human Atlas Systems for Data and Code Interoperability
cns-iu/hra-cell-type-populations-supporting-information
Supporting information page for the HRApop paper
cns-iu/hra-ct-heterogeneity
A repository for summer work on cell type heterogeneity
cns-iu/hra-ftu-explorer-supporting-information
Supporting information page for the FTU Explorer paper (in progress)
cns-iu/hra-glb-download
Download HRA 3D Reference Organ GLB files
cns-iu/hra-glb-preprocessor
Make meshes manifold and filling holes. Generate OFF file for a single mesh from GLB
cns-iu/hra-juelich
cns-iu/hra-kg-supporting-information
A repository to hold Supplemental Information for the HRA Knowledge Graph paper
cns-iu/hra-lymphatics-3d-do
A repo to hold data and code for testing the HRA 3D Digital Object for the axillary lymph nodes
cns-iu/hra-mouse-registrations
Blender files and models for 5x5 mouse registrations
cns-iu/hra-name-disambiguation
A repo to hold work on name disambiguation in HRAlit
cns-iu/hra-pop-helios
Simple pipeline to create KNN networks from single-cell gene expression (counts data).
cns-iu/hra-scrolly-3d-assets
A repository to hold work for scrollytelling with 3D models
cns-iu/hra-workflows-celltypist-reproducibility
cns-iu/katy
Dr. Katy Borner's Profile Page
cns-iu/ldsparql
Query Linked Data with SPARQL