dependencies:
Python 3
numpy
pandas
seaborn
matplotlib
scipy
FlowCytometryTools
Download the script into a folder, when you run make sure your target folder (the folder with fcs files) has a sampleName.csv with the following content:
for example:
| cells | MOI | Virus |
|---|---|---|
| HEK293T | 1000 | AAV2 |
| HEK293T | 5000 | AAV2 |
** make sure the all the characters are capitalized!
to run the script, open jupyter notebook or jupyter lab inside the folder with the script and follow the input instructions.