colbyford
I'm a computational biologist and data architect who works to scale bioinformatics, genomics, & AI workloads in the cloud. Microsoft MVP awardee in AI & Azure
@tuplexyz, @UNCCCharlotte, NC
Pinned Repositories
af3-on-hpc
Logic for running AlphaFold3 on an HPC cluster
DSBA6190-CloudComputing
Course Materials for the DSBA 6190 - Cloud Computing for Data Analysis Course
HADDOCKer
Docker images for the running the HADDOCK system for predicting the structure of biomolecular complexes.
Influenza_H5-Antibody_Predictions
Large-Scale Computational Modeling of H5 Influenza Variants Against HA1-Neutralizing Antibodies
pemfauxlizumab
Pembrolizumab-like Antibody Hallucination using AlphaFold2
PyMOLfold
Plugin for folding sequences directly in PyMOL
SARS-CoV-2_B.1.1.529_Spike-RBD_Predictions
AlphaFold2 and RoseTTAFold predictions of the SARS-CoV-2 B.1.1.529 variant Spike protein with HADDOCK antibody interactions
sparkitecture
A collection of “cookbook-style” scripts for simplifying data engineering and machine learning in Apache Spark.
StrainHub
Welcome to the StrainHub Repo - Files and Data - StrainHub Online:
colbyford's Repositories
colbyford/PyMOLfold
Plugin for folding sequences directly in PyMOL
colbyford/DSBA6190-CloudComputing
Course Materials for the DSBA 6190 - Cloud Computing for Data Analysis Course
colbyford/af3-on-hpc
Logic for running AlphaFold3 on an HPC cluster
colbyford/HADDOCKer
Docker images for the running the HADDOCK system for predicting the structure of biomolecular complexes.
colbyford/zebrafish_mecp2_expression
Behavioral and Transcriptomic Analyses of mecp2 Function in Zebrafish
colbyford/colbyford.github.io
Personal profile website for Colby T. Ford, Ph.D.
colbyford/Influenza_H5-Antibody_Predictions
Large-Scale Computational Modeling of H5 Influenza Variants Against HA1-Neutralizing Antibodies
colbyford/dsba6190-cford38-deploymentlab
colbyford/Ghana_CSP_Haplotypes
Genetic variations of Plasmodium falciparum circumsporozoite protein and the impact on interactions with human immunoproteins and malaria vaccine efficacy - By Dieng and Ford et al.
colbyford/SARS-CoV-2_BA.2.86_Spike-RBD_Predictions
Predicting Antibody and ACE2 Affinity for SARS-CoV-2 BA.2.86 with In Silico Protein Modeling and Docking
colbyford/StrainHub
Welcome to the StrainHub Repo - Files and Data - StrainHub Online:
colbyford/vivax_transcriptome_comparisons
Companion repository for: "Comparative transcriptomics reveal differential gene expression among Plasmodium vivax geographical isolates and implications on erythrocyte invasion mechanisms" by Kepple, et al.
colbyford/SARS-CoV-2_XBB.1.5_Spike-RBD_Predictions
Predicting changes in neutralizing antibody activity for SARS-CoV-2 XBB.1.5 using in silico protein modeling.
colbyford/AlphaFold3
Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch
colbyford/alphafold3-pytorch
Implementation of Alphafold 3 in Pytorch
colbyford/APPT
Affinity Protein-Protein Transformers—State of the art protein-protein binding affinity in seconds!
colbyford/bio-diffusion
A geometry-complete diffusion generative model (GCDM) for 3D molecule generation and optimization (Nature CommsChem)
colbyford/boozy-ai
Code for a simple web chat experience through Azure OpenAI, including Azure OpenA for Boozy,ai
colbyford/colbyford
colbyford/evodiff
Generation of protein sequences and evolutionary alignments via discrete diffusion models
colbyford/FlowDock
Geometric Flow Matching for Generative Protein-Ligand Docking and Affinity Prediction (CASP16)
colbyford/GCDM-SBDD
A geometry-complete diffusion generative model (GCDM) for structure-based drug design (Nature CommsChem)
colbyford/genie2
Protein structure diffusion model for unconditional protein generation and motif scaffolding
colbyford/nextflow-website
Nextflow public web site
colbyford/OpenMM-Docker
Docker image for OpenMM with GPU (CUDA) support for running molecular simulations at-scale.
colbyford/PepFlowww
Full-Atom Peptide Design based on Multi-modal Flow Matching (ICML 2024)
colbyford/ProLLaMA
A Protein Large Language Model for Multi-Task Protein Language Processing
colbyford/ProLLaMA-on-Ollama
Serving the ProLLaMA Protein Language Model on Ollama
colbyford/reclassification-of-sand-dollars
Phylogeny, ancestral ranges and reclassification of sand dollars
colbyford/vscode-ngrok-docker
Docker image for VSCode, web-accessible remotely with ngrok