colbyga

colbyga's Stars

• google-coral/project-bodypix

  BodyPix model demo application for Google Coral

  Language:Python27552

• matplotlib/matplotlib

  matplotlib: plotting with Python

  Language:Python20k7.6k

• matplotlib/cheatsheets

  Official Matplotlib cheat sheets

  Language:Python7.3k883

• fwhelan/coinfinder

  A tool for the identification of coincident (associating and dissociating) genes in pangenomes.

  Language:C++929

• bhattlab/bhattlab_workflows

  Computational workflows for metagenomics tasks, by the Bhatt lab

  Language:Python4615

• carlislerainey/mass-shootings

  Language:R51

• riffomonas/reproducible_research

  Website for the Riffomonas Reproducible Research Tutorial Series

  Language:HTML3517

• riffomonas/minimalR

  Language:Ruby1912

• bxlab/metaWRAP

  MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis

  Language:Shell391191

• arpcard/rgi

  Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on homology and SNP models.

  Language:Python32676

• biocore/oecophylla

  shotgun pipeline

  Language:Python1119

• metagenome-atlas/atlas

  ATLAS - Three commands to start analyzing your metagenome data

  Language:Python37098

• xvazquezc/stuff

  Repository for miscellaneous stuff not worth of independent repos

  Language:Shell1

• seananderson/glmm-course

  Workshop exercises on regression, GLMs, mixed-effects models, and GLMMs in R

  Language:R17466

• ebi-pf-team/interproscan

  Genome-scale protein function classification

  Language:Java29267

• fbreitwieser/pavian

  🌈 Interactive analysis of metagenomics data

  Language:R38475

• patrickwest/EukRep

  Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets

  Language:Python6912

• patrickwest/EukRep_Pipeline

  243

• hadley/stats337

  Readings in applied data science

  Language:R1.6k229

• galaxyproject/galaxy

  Data intensive science for everyone.

  Language:Python1.4k993

• Begia/Hazen-metagenome

  Language:R11

• Begia/Hazen16S

  Language:R21

• broadinstitute/viral-ngs

  Viral genomics analysis pipelines

  Language:Python18867

• enormandeau/Scripts

  Collection of various scripts

  Language:Python7942

• broadinstitute/picard

  A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

  Language:Java973370

• broadinstitute/cromwell

  Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

  Language:Scala989358

• biocore/emp

  Code repository of the Earth Microbiome Project.

  Language:Jupyter Notebook15568

• smrtnrd/_BIF1

  Python courses & exercises

  Language:Jupyter Notebook2

• husonlab/megan-ce

  MEGAN Community Edition

  Language:Java6622

• LangilleLab/microbiome_helper

  A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.

  Language:Python433205