colebrookson

coral-restoration

When is coral restoration viable for conservation 🐟🐠

eeb-r-manual

Code, text, notes, and infrastructure to support the R manual for undergraduate students in the Ecology & Evolutionary Biology department at the University of Toronto :desktop_computer:

good-enough-repository

It doesn't have to be perfect, but let's make it good enough! A workable repository structure for ecology :fish:

kx-sea-lice

Stock-recruit models for the effect of sea lice on wild salmon returns in the Kitasoo / Xai’xais nation

pharos-core

Workflows to format & standardize data into the Pharos data standard for upload :high_brightness:

python-for-biology

All material for online "Introduction to Programming in Python for Biology" workshop series :computer:

r-for-biology

All material for the "Introduction to Programming in R for Biology" workshop series :computer:

sea-lice-sr

How do sea lice on wild and farmed salmon affect the population dynamics of wild pacific salmon? :fish:

Tidy-Tuesday-

This is where I put all my code for my (admittedly amateur) tidy Tuesday contributions

trait-based-rewiring

How do trait-based food webs rewire when they're subjected to different types of stressors? :chart_with_downwards_trend: :chart_with_upwards_trend:

colebrookson/eeb-r-manual

Code, text, notes, and infrastructure to support the R manual for undergraduate students in the Ecology & Evolutionary Biology department at the University of Toronto :desktop_computer:

colebrookson/pharos-core

Workflows to format & standardize data into the Pharos data standard for upload :high_brightness:

colebrookson/urbanfox

Dashboard and code for understanding the distribution of urban foxes and canine distemper in Berlin :fox_face:

colebrookson/arbo-comp

Vector competence of arboviruses

colebrookson/coral-restoration

When is coral restoration viable for conservation 🐟🐠

colebrookson/juvenile-salmon-sealice

Sea lice infestation on Pacific Salmon using data from the Hakai Institute Juvenile Salmon Program (2015-2019)🐟

colebrookson/kx-sea-lice

Stock-recruit models for the effect of sea lice on wild salmon returns in the Kitasoo / Xai’xais nation

colebrookson/sea-lice-sr

How do sea lice on wild and farmed salmon affect the population dynamics of wild pacific salmon? :fish:

colebrookson/trait-based-rewiring

How do trait-based food webs rewire when they're subjected to different types of stressors? :chart_with_downwards_trend: :chart_with_upwards_trend:

colebrookson/bati-report

Short report of sea lice trends in and around the Broughton Archipelago during the BATI program :fish:

colebrookson/colebrookson

colebrookson/coles-research

My research website based off the hugo toha theme ! :computer:

colebrookson/disease-overyield

How do competition overyielding dynamics change with the introduction of parasite dynamics?

colebrookson/EF_Activities

Hands-on activities associated with the Ecological Forecasting book and graduate class

colebrookson/jsp-data

Juvenile Salmon Program data

colebrookson/knitr-examples

A collection of knitr examples

colebrookson/lterdatasampler

LTER data samples to teach environmental data science

colebrookson/manuscript

This repository implements an automated system to write our collaborative manuscript, while tracking changes and contributions.

colebrookson/Peacock2013EcolAppl

Details of the analysis of pink salmon population data from Peacock et al. (2013 Ecol. Appl.), including spawner and catch data and R code for compiling spawner-recruit pairs and fitting the Ricker model.

colebrookson/PNWColors

A Pacific Northwest inspired R color palette package

colebrookson/predictability

Simulations exploring measures of predictability for time series data

colebrookson/quarto-template

colebrookson/research-access

The Echo Chamber of the Ivory Tower: How Ecological Research Intended For The Applied Sphere Never Actually Makes It There :books: :lock: :key:

colebrookson/slurm-targets

A minimal reprex to work with SLURM and targets :computer:

colebrookson/snakemake-tutorial

colebrookson/targets-testing

Figuring out how best to set up files for using `targets`

colebrookson/tick-forecast

EFI Short Course project on forecasting tick density

colebrookson/virion

The Global Virome in One Network

colebrookson/wombling

R package to perform wombling methods

colebrookson/wsn-reproducibility

Content for WSN 2023 workshop on reproducibility in R