Pinned Repositories
CloudStartupScriptWrapper
This is a python program designed for running startup/shutdown scripts on a compute instance. It is particularly useful for logging outputs of multiple commands as well as logging system cpu, memory, and i/o usage.
collinmelton.github.io
Github io page
DataViz
This is a repository for data viz examples from coursework and elsewhere.
DDCloudServer
Adapted from DynamicDiskCloudSoftware this project will contain a SQLAlchemy backend and interaction between user and system and system itself (master to workers) will be via web protocols.
DynamicDiskCloudSoftware
This software is designed to run genomics workflows on the Google Compute Engine. The distinguishing characteristic of this software is that it is designed to automatically mount and unmount disk storage as needed during the course of the workflow. This is in contrast to NFS storage or saving intermediate results to cloud storage and in certain use cases more optimally utilizes resources.
MismappingAnalysis
This project is intended to help researchers identify single nucleotide variants that could have been falsely called as variants due to mapping errors. It utilizes BLAT to identify homologous regions of the genome where the called variant is the reference.
RecurrentMutationStats
This contains code for statistical analysis of recurrent mutations in whole genome sequencing data.
RegulomeDBAutomatedDownload
This repository contains code to enable automate the downloading of RegulomeDB annotations from a tsv source file.
SCGCancerPipeline
Software to run a cancer pipeline on the Stanford Cluster (can be generalized to any cluster that operates via drmaa.
collinmelton's Repositories
collinmelton/RecurrentMutationStats
This contains code for statistical analysis of recurrent mutations in whole genome sequencing data.
collinmelton/DynamicDiskCloudSoftware
This software is designed to run genomics workflows on the Google Compute Engine. The distinguishing characteristic of this software is that it is designed to automatically mount and unmount disk storage as needed during the course of the workflow. This is in contrast to NFS storage or saving intermediate results to cloud storage and in certain use cases more optimally utilizes resources.
collinmelton/RegulomeDBAutomatedDownload
This repository contains code to enable automate the downloading of RegulomeDB annotations from a tsv source file.
collinmelton/CloudStartupScriptWrapper
This is a python program designed for running startup/shutdown scripts on a compute instance. It is particularly useful for logging outputs of multiple commands as well as logging system cpu, memory, and i/o usage.
collinmelton/collinmelton.github.io
Github io page
collinmelton/DataViz
This is a repository for data viz examples from coursework and elsewhere.
collinmelton/DDCloudServer
Adapted from DynamicDiskCloudSoftware this project will contain a SQLAlchemy backend and interaction between user and system and system itself (master to workers) will be via web protocols.
collinmelton/MismappingAnalysis
This project is intended to help researchers identify single nucleotide variants that could have been falsely called as variants due to mapping errors. It utilizes BLAT to identify homologous regions of the genome where the called variant is the reference.
collinmelton/SCGCancerPipeline
Software to run a cancer pipeline on the Stanford Cluster (can be generalized to any cluster that operates via drmaa.