Pinned Repositories
beng_213
cobrame
A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
cobrame_supplement
Scripts needed to reproduce the figures in https://doi.org/10.1371/journal.pcbi.1006302
cobrapy
COBRApy is a package for constraints-based modeling of biological networks
ecolime
Data and tools necessary to construct iLE1678-ME, a genome-scale model of E. coli K-12 MG1655 metabolism and expression
fba4l_course_material
keff_mapping
Scripts to reproduce ME-model simulations from "Kinetic profiling of metabolic specialists demonstrates stability and consistency of in vivo enzyme turnover numbers"
me_biomass
Reproduce the figures in "Computation of condition-dependent proteome allocation reveals variability in the macro and micro nutrient requirements for growth"
OptAux
Reproduce the figures in "The genetic basis for adaptation of model-designed syntrophic co-cultures"
qbio
Material for qbio18 mx
coltonlloyd's Repositories
coltonlloyd/cobrame
A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
coltonlloyd/ecolime
Data and tools necessary to construct iLE1678-ME, a genome-scale model of E. coli K-12 MG1655 metabolism and expression
coltonlloyd/fba4l_course_material
coltonlloyd/OptAux
Reproduce the figures in "The genetic basis for adaptation of model-designed syntrophic co-cultures"
coltonlloyd/qbio
Material for qbio18 mx
coltonlloyd/beng_213
coltonlloyd/cobrame_supplement
Scripts needed to reproduce the figures in https://doi.org/10.1371/journal.pcbi.1006302
coltonlloyd/cobrapy
COBRApy is a package for constraints-based modeling of biological networks
coltonlloyd/keff_mapping
Scripts to reproduce ME-model simulations from "Kinetic profiling of metabolic specialists demonstrates stability and consistency of in vivo enzyme turnover numbers"
coltonlloyd/me_biomass
Reproduce the figures in "Computation of condition-dependent proteome allocation reveals variability in the macro and micro nutrient requirements for growth"
coltonlloyd/minspan
coltonlloyd/patRoon
Workflow solutions for mass-spectrometry based non-target analysis.
coltonlloyd/solvemepy
solveME public repository