Pinned Repositories
ckaidocker
Docker Configuration for AI in Python
ckrdocker
Docker Configuration for Data Science / Bioinformatics in R
combiz
nf-core-scflow
Complete analysis workflow for single-cell/nuclei RNA-sequencing data.
scFlow
Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.
scFlow-Workshop
Materials for the scFlow Workshop
scFlow_Supplementary
Supplemental Data for the scFlow Manuscript
scflowpy
Python helper package for scFlow
yamlpack
En-masse installation of R-packages
combiz's Repositories
combiz/scFlow
Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.
combiz/yamlpack
En-masse installation of R-packages
combiz/nf-core-scflow
Complete analysis workflow for single-cell/nuclei RNA-sequencing data.
combiz/scFlow_Supplementary
Supplemental Data for the scFlow Manuscript
combiz/scFlow-Workshop
Materials for the scFlow Workshop
combiz/scflowpy
Python helper package for scFlow
combiz/ckaidocker
Docker Configuration for AI in Python
combiz/ckrdocker
Docker Configuration for Data Science / Bioinformatics in R
combiz/combiz
combiz/configs
Config files used to define parameters specific to compute environments at different Institutions
combiz/d3-ass1-plot
Custom D3.JS plot of epigenetic data at the ASS1 gene promoter
combiz/dagster
An orchestration platform for the development, production, and observation of data assets.
combiz/deeplearning-biology
A list of deep learning implementations in biology
combiz/hello
Classic hello world script in Nextflow language
combiz/hierarchicell
An R package for simulating cell-type specific and hierarchical single-cell expression data
combiz/Lending_Club
Predicting creditworthiness of loan applicants using logistic regression models (with R)
combiz/ML-React-App-Template
This is a template for creating a Machine Learning application with its front-end developed using React which interacts with a Flask service as the back-end and makes predictions.
combiz/RANN.L1
R package providing fast nearest neighbour search (wraps ANN library)
combiz/rnaseq
RNA sequencing analysis pipeline using STAR, HISAT2 and Salmon with gene counts and quality control
combiz/scFlowData
Supplementary data files for scFlow
combiz/scFlowExamples
combiz/shRNA-GUI
A simple PyQT5 GUI tool for design of oligonucleotides for cloning into a vector for shRNA mediated gene knockdown
combiz/test-datasets
Test data to be used for automated testing with the nf-core pipelines