Pinned Repositories
chemical-helper
chemodiv
LinkedDataHub
The Knowledge Graph notebook. Apache license.
matchms
Python library for processing (tandem) mass spectrometry data and for computing spectral similarities.
mgf-filterer
MINE-Database
Metabolic In silico Network Expansion (MINE) Database Construction and DB Logic
ms-annotator
A Python package to proceed to the annotation of mass spectra with chemical structures
mzdata
vscode-sparql-notebook
Visual Studio Code SPARQL Notebook Extension
zen
zen is a Python library that provides a simple and intuitive way to interact with Zenodo. With zen, you can automate and streamline various tasks related to creating, managing, and exploring Zenodo depositions, all within your Python environment.
commons-research's Repositories
commons-research/ms-annotator
A Python package to proceed to the annotation of mass spectra with chemical structures
commons-research/anticipated-lotus
commons-research/chemical-helper
commons-research/chemodiv
commons-research/coleus-project
Coleus project Datatreatment Audrey
commons-research/common_dws_public_storage
Serve files not hosted on the Dendron
commons-research/commons-dws-public
COMMONS Lab Public Dendron Workspace
commons-research/cookiecutter-snekpack
🍪 A cookiecutter package for an enlightened python package
commons-research/dataset-extractor-lotus
extract and prepare (for MINEs) data from LOTUS
commons-research/expanded-naturalproduct-chemspace
Explanation of the extraction from the lotus dataset - masterthesis by P. Amrein
commons-research/flask_sandbox
commons-research/isdb_preparator
Scripts to prepare structures for frag with cfm
commons-research/LinkedDataHub
The Knowledge Graph notebook. Apache license.
commons-research/matchms
Python library for processing (tandem) mass spectrometry data and for computing spectral similarities.
commons-research/metabolite_annotator
A Python package to proceed to metabolite annotation from mass spectrometry data
commons-research/mgf-filterer
commons-research/MINE-Database
Metabolic In silico Network Expansion (MINE) Database Construction and DB Logic
commons-research/mzdata
commons-research/read-MINE-results
To process a to big dataset, it is needed to work with specific tools.
commons-research/report-template
A generic report template
commons-research/rtd-tuto
commons-research/streamlit-graph
commons-research/SWAT4HCLS_tutorial
commons-research/vimms
A framework to develop, test and optimise fragmentation strategies in LC-MS metabolomics
commons-research/vscode-sparql-notebook
Visual Studio Code SPARQL Notebook Extension
commons-research/zen
zen is a Python library that provides a simple and intuitive way to interact with Zenodo. With zen, you can automate and streamline various tasks related to creating, managing, and exploring Zenodo depositions, all within your Python environment.
commons-research/commons-server-git-fetcher
A script to periodically fetch git repos of interest
commons-research/epicoccum-nigrum-metabolomics
A repo for the Epicoccum nigrum metabolomics and NP isolation paper (Azzollini)
commons-research/microcosmics
A dump repo for the microcosmics project
commons-research/reaction-viewer-gadget
A .js gadget to display reaction SMIRKS and SMARTS on Wikidata