Computational Medicine Lab

.github

Public organization README repository.

all-inclusive-r-apptainer

Definition files for building an R container using radian and including various additional libraries for installing R packages.

gwascatftp

R package to access GWAS Catalog FTP data

olink-fasting-study

phecode-covid19-ukb

phecode-gwas-ukb

project-template

A suggested directory and file structure for analysis projects in the computational medicine group

proteome-determinants-somalogic

script-backup-utility

Bash scripts to search and backup all files in specific directories with a specific extension.

sparse-proteomic-prediction-of-common-and-rare-diseases

This repository contains code associated with the study "Proteomic signatures improve risk predictions for common and rare diseases" (DOI pending) The provided scripts are not designed to work out of the box, but rather illustrate the main steps done for each of the analysis performed.

comp-med/sparse-proteomic-prediction-of-common-and-rare-diseases

This repository contains code associated with the study "Proteomic signatures improve risk predictions for common and rare diseases" (DOI pending) The provided scripts are not designed to work out of the box, but rather illustrate the main steps done for each of the analysis performed.

comp-med/olink-fasting-study

comp-med/gwascatftp

R package to access GWAS Catalog FTP data

comp-med/phecode-covid19-ukb

comp-med/phecode-gwas-ukb

comp-med/proteome-determinants-somalogic

comp-med/.github

Public organization README repository.

comp-med/all-inclusive-r-apptainer

Definition files for building an R container using radian and including various additional libraries for installing R packages.

comp-med/missingpy

Missing Data Imputation for Python (2023 update)

comp-med/nf-munge-sumstats

Nextflow pipeline to download and format (i.e. munge) GWAS summary statistics

comp-med/project-template

A suggested directory and file structure for analysis projects in the computational medicine group

comp-med/script-backup-utility

Bash scripts to search and backup all files in specific directories with a specific extension.

comp-med/nf-download-sumstats

Nextflow pipeline for downloading raw GWAS summary statistics to be then processed using `nf-munge-sumstats`

comp-med/nf-template

Template directory for Nextflow pipelines providing basic files and directories when setting up a new workflow

comp-med/r-prodente

Companion R package for a publication to run enrichment analysis across protein determining factors