error java.lang.NullPointerException

Question

error java.lang.NullPointerException

AnkeTraut opened this issue 3 years ago · 4 comments

I tested the MPA with the the demo *.fasta and the *.mgf files according to the publiation of Schiebenhöfer et al. 2020 ... but I receive the following error message:

Severe Error
Message:
java.lang.NullPointerException
Level:
SEVERE
Stack Trace:
null
de.mpa.db.mysql.accessor.ProjectTableAccessor.findAllProjects(ProjectTableAccessor.java:395)
de.mpa.db.mysql.ProjectManager.getProjects(ProjectManager.java:429)
de.mpa.client.ui.projectpanel.ProjectPanel.refreshProjectTable(ProjectPanel.java:815)
de.mpa.client.ui.projectpanel.ProjectPanel.(ProjectPanel.java:150)
de.mpa.client.ui.ClientFrame.initComponents(ClientFrame.java:293)
de.mpa.client.ui.ClientFrame.(ClientFrame.java:178)
de.mpa.client.ui.ClientFrame.getInstance(ClientFrame.java:138)
de.mpa.client.ui.ClientFrame.restart(ClientFrame.java:146)
de.mpa.client.ui.inputpanel.SettingsPanel$BatchProcessWorker.doInBackground(SettingsPanel.java:506)
javax.swing.SwingWorker$1.call(Unknown Source)
java.util.concurrent.FutureTask.run(Unknown Source)
javax.swing.SwingWorker.run(Unknown Source)
java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
java.lang.Thread.run(Unknown Source)

I activated the MPA MySQL Service manually and restarted the computer but the program still fails...

What can I do?

All the best,
Anke

Answer 1 · 2021-07-15T09:53:35.000Z

Dear Anke, if I like we can help you with your issues? Therefore, I would propose to zoom or to skype? regards Robert

…

----- On Jul 8, 2021, at 8:30 AM, AnkeTraut ***@***.***> wrote:

I tested the MPA with the the demo *.fasta and the *.mgf files according to the publiation of Schiebenhöfer et al. 2020 ... but I receive the following error message: Severe Error Message: java.lang.NullPointerException Level: SEVERE Stack Trace: null de.mpa.db.mysql.accessor.ProjectTableAccessor.findAllProjects(ProjectTableAccessor.java:395) de.mpa.db.mysql.ProjectManager.getProjects(ProjectManager.java:429) de.mpa.client.ui.projectpanel.ProjectPanel.refreshProjectTable(ProjectPanel.java:815) de.mpa.client.ui.projectpanel.ProjectPanel.(ProjectPanel.java:150) de.mpa.client.ui.ClientFrame.initComponents(ClientFrame.java:293) de.mpa.client.ui.ClientFrame.(ClientFrame.java:178) de.mpa.client.ui.ClientFrame.getInstance(ClientFrame.java:138) de.mpa.client.ui.ClientFrame.restart(ClientFrame.java:146) de.mpa.client.ui.inputpanel.SettingsPanel$BatchProcessWorker.doInBackground(SettingsPanel.java:506) javax.swing.SwingWorker$1.call(Unknown Source) java.util.concurrent.FutureTask.run(Unknown Source) javax.swing.SwingWorker.run(Unknown Source) java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source) java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) java.lang.Thread.run(Unknown Source) I activated the MPA MySQL Service manually and restarted the computer but the program still fails... What can I do? All the best, Anke — You are receiving this because you are subscribed to this thread. Reply to this email directly, [ #36 | view it on GitHub ] , or [ https://github.com/notifications/unsubscribe-auth/ADLZCYRIVGH2MP5CTFY5KADTWVAZRANCNFSM5AACBBMQ | unsubscribe ] .

Answer 2 · 2021-08-04T06:59:58.000Z

Dear Robert, thank you very much. I would like to discuss my issues with you. When do you have free time space in your schedule? All the best, Anke

____________________________________________ Dr. Anke Trautwein-Schult University of Greifswald Center for Functional Genomics of Microbes Institute for Microbiology Department of Microbial Proteomics Felix-Hausdorff-Str. 8 17489 Greifswald phone: +49 3834 420 5922 fax: +49 3834 420 5909 Am Donnerstag, den 15-07-2021 um 11:53 schrieb RobertHeyer: Dear Anke, if I like we can help you with your issues? Therefore, I would propose to zoom or to skype? regards Robert

----- On Jul 8, 2021, at 8:30 AM, AnkeTraut ***@***.***> wrote:

I tested the MPA with the the demo *.fasta and the *.mgf files

according to the

publiation of Schiebenhöfer et al. 2020 ... but I receive the

following error

message: Severe Error Message: java.lang.NullPointerException Level: SEVERE Stack Trace: null

de.mpa.db.mysql.accessor.ProjectTableAccessor.findAllProjects(ProjectTableAccessor.java:395)

de.mpa.db.mysql.ProjectManager.getProjects(ProjectManager.java:429)

de.mpa.client.ui.projectpanel.ProjectPanel.refreshProjectTable(ProjectPanel.java:815)

de.mpa.client.ui.projectpanel.ProjectPanel.(ProjectPanel.java:150) de.mpa.client.ui.ClientFrame.initComponents(ClientFrame.java:293) de.mpa.client.ui.ClientFrame.(ClientFrame.java:178) de.mpa.client.ui.ClientFrame.getInstance(ClientFrame.java:138) de.mpa.client.ui.ClientFrame.restart(ClientFrame.java:146)

de.mpa.client.ui.inputpanel.SettingsPanel$BatchProcessWorker.doInBackground(SettingsPanel.java:506)

javax.swing.SwingWorker$1.call(Unknown Source) java.util.concurrent.FutureTask.run(Unknown Source) javax.swing.SwingWorker.run(Unknown Source) java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source) java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) java.lang.Thread.run(Unknown Source) I activated the MPA MySQL Service manually and restarted the

computer but the

program still fails... What can I do? All the best, Anke — You are receiving this because you are subscribed to this thread. Reply to this email directly, [ #36 | view

it on

GitHub ] , or [

https://github.com/notifications/unsubscribe-auth/ADLZCYRIVGH2MP5CTFY5KADTWVAZRANCNFSM5AACBBMQ

| unsubscribe ] .

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub [1], or unsubscribe [2]. Links: ------ [1] #36 (comment) [2] https://github.com/notifications/unsubscribe-auth/ANJU32PVCP5LYE4JM2SIEJTTX2V2TANCNFSM5AACBBMQ

Answer 3 · 2021-08-09T08:42:03.000Z

Hallo Anke, wir wäre es mit Mittwoch um 8.00? LG Robert

…

----- On Aug 4, 2021, at 9:00 AM, AnkeTraut ***@***.***> wrote:

Dear Robert, thank you very much. I would like to discuss my issues with you. When do you have free time space in your schedule? All the best, Anke ____________________________________________ Dr. Anke Trautwein-Schult University of Greifswald Center for Functional Genomics of Microbes Institute for Microbiology Department of Microbial Proteomics Felix-Hausdorff-Str. 8 17489 Greifswald phone: +49 3834 420 5922 fax: +49 3834 420 5909 Am Donnerstag, den 15-07-2021 um 11:53 schrieb RobertHeyer: Dear Anke, if I like we can help you with your issues? Therefore, I would propose to zoom or to skype? regards Robert ----- On Jul 8, 2021, at 8:30 AM, AnkeTraut ***@***.***> wrote: > I tested the MPA with the the demo *.fasta and the *.mgf files according to the > publiation of Schiebenhöfer et al. 2020 ... but I receive the following error > message: > Severe Error > Message: > java.lang.NullPointerException > Level: > SEVERE > Stack Trace: > null de.mpa.db.mysql.accessor.ProjectTableAccessor.findAllProjects(ProjectTableAccessor.java:395) > de.mpa.db.mysql.ProjectManager.getProjects(ProjectManager.java:429) de.mpa.client.ui.projectpanel.ProjectPanel.refreshProjectTable(ProjectPanel.java:815) > de.mpa.client.ui.projectpanel.ProjectPanel.(ProjectPanel.java:150) > de.mpa.client.ui.ClientFrame.initComponents(ClientFrame.java:293) > de.mpa.client.ui.ClientFrame.(ClientFrame.java:178) > de.mpa.client.ui.ClientFrame.getInstance(ClientFrame.java:138) > de.mpa.client.ui.ClientFrame.restart(ClientFrame.java:146) de.mpa.client.ui.inputpanel.SettingsPanel$BatchProcessWorker.doInBackground(SettingsPanel.java:506) > javax.swing.SwingWorker$1.call(Unknown Source) > java.util.concurrent.FutureTask.run(Unknown Source) > javax.swing.SwingWorker.run(Unknown Source) > java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source) > java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) > java.lang.Thread.run(Unknown Source) > I activated the MPA MySQL Service manually and restarted the computer but the > program still fails... > What can I do? > All the best, > Anke > — > You are receiving this because you are subscribed to this thread. > Reply to this email directly, [ > #36 | view it on > GitHub ] , or [ https://github.com/notifications/unsubscribe-auth/ADLZCYRIVGH2MP5CTFY5KADTWVAZRANCNFSM5AACBBMQ > | unsubscribe ] . — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub [1], or unsubscribe [2]. Links: ------ [1] #36 (comment) [2] https://github.com/notifications/unsubscribe-auth/ANJU32PVCP5LYE4JM2SIEJTTX2V2TANCNFSM5AACBBMQ — You are receiving this because you commented. Reply to this email directly, [ #36 (comment) | view it on GitHub ] , or [ https://github.com/notifications/unsubscribe-auth/ADLZCYX7HQ6E2XABYUPC7PDT3DQPTANCNFSM5AACBBMQ | unsubscribe ] . Triage notifications on the go with GitHub Mobile for [ https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675 | iOS ] or [ https://play.google.com/store/apps/details?id=com.github.android&utm_campaign=notification-email | Android ] .

Answer 4 · 2021-08-09T10:27:37.000Z

Hallo Robert, sehr gerne, das passt in meinen Plan. LG Anke

___________________________________ Dr. Anke Trautwein-Schult University of Greifswald Center for Functional Genomics of Microbes Institute for Microbiology Department of Microbial Proteomics Felix-Hausdorff-Str. 8 17489 Greifswald phone: +49 3834 420 5922 fax: +49 3834 420 5909 Am Montag, den 09-08-2021 um 10:42 schrieb RobertHeyer: Hallo Anke, wir wäre es mit Mittwoch um 8.00? LG Robert

----- On Aug 4, 2021, at 9:00 AM, AnkeTraut ***@***.***> wrote:

Dear Robert, thank you very much. I would like to discuss my issues with you.

When

do you have free time space in your schedule? All the best, Anke ____________________________________________ Dr. Anke Trautwein-Schult University of Greifswald Center for Functional Genomics of Microbes Institute for Microbiology Department of Microbial Proteomics Felix-Hausdorff-Str. 8 17489 Greifswald phone: +49 3834 420 5922 fax: +49 3834 420 5909 Am Donnerstag, den 15-07-2021 um 11:53 schrieb RobertHeyer: Dear Anke, if I like we can help you with your issues? Therefore, I would

propose

to zoom or to skype? regards Robert ----- On Jul 8, 2021, at 8:30 AM, AnkeTraut ***@***.***> wrote: > I tested the MPA with the the demo *.fasta and the *.mgf files according to the > publiation of Schiebenhöfer et al. 2020 ... but I receive the following error > message: > Severe Error > Message: > java.lang.NullPointerException > Level: > SEVERE > Stack Trace: > null

de.mpa.db.mysql.accessor.ProjectTableAccessor.findAllProjects(ProjectTableAccessor.java:395)

>

de.mpa.db.mysql.ProjectManager.getProjects(ProjectManager.java:429)

de.mpa.client.ui.projectpanel.ProjectPanel.refreshProjectTable(ProjectPanel.java:815)

> de.mpa.client.ui.projectpanel.ProjectPanel.(ProjectPanel.java:150) > de.mpa.client.ui.ClientFrame.initComponents(ClientFrame.java:293) > de.mpa.client.ui.ClientFrame.(ClientFrame.java:178) > de.mpa.client.ui.ClientFrame.getInstance(ClientFrame.java:138) > de.mpa.client.ui.ClientFrame.restart(ClientFrame.java:146)

de.mpa.client.ui.inputpanel.SettingsPanel$BatchProcessWorker.doInBackground(SettingsPanel.java:506)

> javax.swing.SwingWorker$1.call(Unknown Source) > java.util.concurrent.FutureTask.run(Unknown Source) > javax.swing.SwingWorker.run(Unknown Source) > java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source) > java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) > java.lang.Thread.run(Unknown Source) > I activated the MPA MySQL Service manually and restarted the computer but the > program still fails... > What can I do? > All the best, > Anke > — > You are receiving this because you are subscribed to this thread. > Reply to this email directly, [ > #36 |

view

it on > GitHub ] , or [

https://github.com/notifications/unsubscribe-auth/ADLZCYRIVGH2MP5CTFY5KADTWVAZRANCNFSM5AACBBMQ

> | unsubscribe ] . — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub [1], or unsubscribe [2]. Links: ------ [1]

#36 (comment)

[2]

https://github.com/notifications/unsubscribe-auth/ANJU32PVCP5LYE4JM2SIEJTTX2V2TANCNFSM5AACBBMQ

— You are receiving this because you commented. Reply to this email directly, [

#36 (comment)

| view it on GitHub ] , or [

https://github.com/notifications/unsubscribe-auth/ADLZCYX7HQ6E2XABYUPC7PDT3DQPTANCNFSM5AACBBMQ

| unsubscribe ] . Triage notifications on the go with GitHub Mobile for [

https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675

| iOS ] or [

https://play.google.com/store/apps/details?id=com.github.android&utm_campaign=notification-email

| Android ] .

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub [1], or unsubscribe [2]. Triage notifications on the go with GitHub Mobile for iOS [3] or Android [4]. Links: ------ [1] #36 (comment) [2] https://github.com/notifications/unsubscribe-auth/ANJU32KR2YB676HI3U2RBTTT36IGLANCNFSM5AACBBMQ [3] https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675 [4] https://play.google.com/store/apps/details?id=com.github.android&utm_campaign=notification-email