In this repository there is a data file, and several sample scripts to analyze the that dataset. The data is in the data directory, and consists of an alignment of the 18s gene.

The tools which we have provided samples scripts are MrBayes, RAxML-NG, and RevBayes.

MrBayes

cd mrbayes
mb mb.nex

RAxML-NG

cd raxml
./run.sh

RevBayes

cd revbayes
rb run.Rev