pyGen: Microsoft genomics complete workflow
Methods and classes that serve to submit workflows to the Microsoft Genomics Azure service, starting with fastq files on local machine.
class azureGenomics
Submission of the workflow proper to the Azure service.
azureGenomics(msgen_subkey,
region,
inp_sa_name,
inp_sa_key,
inp_cont_name,
out_sa_name = None,
out_sa_key = None,
out_cont_name = None)
method storageProvisionUpload
Provision a storage account and upload files. If storage account exists create container and upload files.