cooperlab
Investigating ways to improve pathology practice and tissue based studies through software. Faculty since 2012 - Emory, Georgia Tech, and Northwestern.
Department of Pathology, Northwestern UniversityChicago, IL
Pinned Repositories
ActiveLearning
Software and documentation from the active learning project on interactive classification.
anonymize-slide
Delete the label from a whole-slide image
CellNet
DecomposeCNN
histoqc_plugin
A girder plugin for running HistoQC within DSA
KNN_Survival
MEDICI
MEDICI: Mining Essentiality Data to Identify Critical Interactions for Cancer Drug Target Discovery and Development
NucleiCuts
An implementation of Al-Kofahi's 2010 paper on nuclear segmentation using graph cutting methods.
RegionProposal
Region proposal and patient-level prediction work.
TCGAIntegrator
Python utilities for building integrated views of TCGA data.
cooperlab's Repositories
cooperlab/TCGAIntegrator
Python utilities for building integrated views of TCGA data.
cooperlab/ActiveLearning
Software and documentation from the active learning project on interactive classification.
cooperlab/NucleiCuts
An implementation of Al-Kofahi's 2010 paper on nuclear segmentation using graph cutting methods.
cooperlab/CellNet
cooperlab/DecomposeCNN
cooperlab/MEDICI
MEDICI: Mining Essentiality Data to Identify Critical Interactions for Cancer Drug Target Discovery and Development
cooperlab/RegionProposal
Region proposal and patient-level prediction work.
cooperlab/histoqc_plugin
A girder plugin for running HistoQC within DSA
cooperlab/KNN_Survival
cooperlab/anonymize-slide
Delete the label from a whole-slide image
cooperlab/bootstrap
The most popular HTML, CSS, and JavaScript framework for developing responsive, mobile first projects on the web.
cooperlab/histolab
Library for Digital Pathology Image Processing
cooperlab/pydata-sphinx-theme
A clean, three-column Sphinx theme with Bootstrap for the PyData community
cooperlab/TASI
Temporal Analysis of Spheroid Imaging