Pinned Repositories
cooplab.github.io
github pages for cooplab
dmc
Distinguishing among modes of convergent adaptation using population genomic data
euroibd
Code to do data processing and create figures for "The geography of recent genetic ancestry across Europe", http://arxiv.org/abs/1207.3815
genealogy
Genetic_ancestors
Scripts to generate simulations and plots used in blog posts on genetic and genealogical ancestry gcbias.org/category/genetic-genealogy/ . These scripts were written over a couple of afternoons and are by no means optimal ways of constructing these quantities. Hopefully they will be of use.
popgen-notes
Population genetics notes
Popgen_EVE102_2012
Pdfs of slides from 2018 popgen course
Popgen_teaching_code
pophistory-tutorial
Tutorial on using popular tools for learning about population history
R_popgen_notes_code
cooplab's Repositories
cooplab/popgen-notes
Population genetics notes
cooplab/Popgen_teaching_code
cooplab/Popgen_EVE102_2012
Pdfs of slides from 2018 popgen course
cooplab/pophistory-tutorial
Tutorial on using popular tools for learning about population history
cooplab/R_popgen_notes_code
cooplab/dmc
Distinguishing among modes of convergent adaptation using population genomic data
cooplab/genealogy
cooplab/labdocs
A place for lab related documents
cooplab/rhps_coalescent
Code associated with the paper "Reconstructing the history of polygenic scores using coalescent trees" by M.D. Edge and G. Coop.
cooplab/startmrca
An R package to estimate the timing of selection for a beneficial allele.
cooplab/admixcov_data_Simon_Coop
Variance decomposition analysis of UK and Bohemian human ancient DNA data
cooplab/admixcov_sims_Simon_Coop
cooplab/bees
Genomic project analyzing admixture in Africanized honey bees
cooplab/Buffalo_Coop_selection_covariances
cooplab/confoundedGWAS_Veller_Coop
cooplab/conStruct
method for modeling continuous and discrete population genetic structure
cooplab/convergence
cooplab/eve102
cooplab/hilo
Scripts related to publication: Calfee E, Gates D, Lorant A, Perkins MT, Coop G, Ross-Ibarra J (2021). Selective sorting of ancestral introgression in maize and teosinte along an elevational cline. bioRxiv. https://www.biorxiv.org/content/10.1101/2021.03.05.434040v1
cooplab/ldsim
An R/shiny simulation app for teaching linkage disequilibrium
cooplab/mathii.github.com
Website
cooplab/old_geology_mice_code
cooplab/polygenic_outcomes_sexual_antagonism_Muralidhar_Coop
Simulation code for pre-print "Polygenic outcomes of sexually antagonistic selection" (doi: 10.1101/2023.03.02.530911)
cooplab/py-admixcov-Simon_Coop
Python functions module for the admixture covariance project
cooplab/qpc-maize
cooplab/selection-against-introgression_Groh_Coop
cooplab/selTime_neanderthal_AI
Inferring the time that selection favored Neanderthal introgressed alleles in modern human populations: statistical inference method, imputation of ancient samples, examples
cooplab/SLiMsims_StabilizingSelection
Code to generate simulations of stabilizing selection on complex traits in SLiM and process output data
cooplab/SpaceMix
cooplab/tempautocov
Code and some data to reproduce Buffalo and Coop (2019)