This is a fork from pepatac on 11/13/2020 This repository cuts out many of the steps of the pepatac pipeline to create a streamlined qc pipeline that should only be used for obtaining QC stats for low-depth sequencing runs.
PEPATAC is a pipeline designed to process ATAC-seq data. For more information see: http://pepatac.databio.org/
Develop docs with:
mkdocs serve -f mkdocs.yml
Build and deploy with:
mkdocs build -f mkdocs.yml -d $CODEBASE/code.databio.org/pepatac/
Pull requests welcome. Active development should occur in a development or feature branch.
- Jin Xu, jinxu9@stanford.edu
- Nathan Sheffield, nathan@code.databio.org
- Jason Smith, jasonsmith@virginia.edu
- Ryan Corces, rcorces@stanford.edu
- Vince Reuter, vreuter@protonmail.com
- Others... (add your name)