corneliusroemer/nwk-formatter

Formatting newick trees for manual editing

Newick Tree Validator and Formatter

Simple utility to validate and format Newick trees.

Usage

Validation without formatting:

./main.py <tree.nwk>

In place formatting:

./main.py <tree.nwk> --inplace

Outputting formatted tree to a separate file:

./main.py <tree.nwk> --outfile <output.nwk>

Outputting list of terminal nodes into a text file:

./main.py <tree.nwk> --terminals <terminals.txt>

Requirements

• Python
• Typer
• BioPython