Newick Tree Validator and Formatter
Simple utility to validate and format Newick trees.
Usage
Validation without formatting:
./main.py <tree.nwk>
In place formatting:
./main.py <tree.nwk> --inplace
Outputting formatted tree to a separate file:
./main.py <tree.nwk> --outfile <output.nwk>
Outputting list of terminal nodes into a text file:
./main.py <tree.nwk> --terminals <terminals.txt>
Requirements
- Python
- Typer
- BioPython