cortex-lab

Pinned Repositories

allenCCF
Tools to work with Allen Inst CCF data in matlab
Language:MATLAB127 14 4678
alyx
Database for experimental neuroscience laboratories
Language:Python44 14 58911
KiloSort
GPU code for spike sorting
Language:MATLAB179 38 258100
neuropixels
Information about Neuropixels electrode arrays
Language:MATLAB84 29 6215
phy
phy: interactive visualization and manual spike sorting of large-scale ephys data
Language:Python331 26 1.1k162
Rigbox
A MATLAB toolbox for running behavioral neuroscience experiments and managing data
Language:HTML33 9 23316
sortingQuality
Functions to assess quality of spike sorting results
Language:MATLAB32 10 223
spikes
cortex lab code for electrophysiology
Language:MATLAB77 11 1384
Suite2P
Tools for processing 2P recordings
Language:MATLAB124 38 17167
widefield
Image processing and tools for widefield imaging
Language:MATLAB18 9 265

cortex-lab's Repositories

cortex-lab/phy
phy: interactive visualization and manual spike sorting of large-scale ephys data
Language:Python331 26 1.1k162
cortex-lab/KiloSort
GPU code for spike sorting
Language:MATLAB179 38 258100
cortex-lab/allenCCF
Tools to work with Allen Inst CCF data in matlab
Language:MATLAB127 14 4678
cortex-lab/Suite2P
Tools for processing 2P recordings
Language:MATLAB124 38 17167
cortex-lab/neuropixels
Information about Neuropixels electrode arrays
Language:MATLAB84 29 6215
cortex-lab/spikes
cortex lab code for electrophysiology
Language:MATLAB77 11 1384
cortex-lab/alyx
Database for experimental neuroscience laboratories
Language:Python44 14 58911
cortex-lab/Rigbox
A MATLAB toolbox for running behavioral neuroscience experiments and managing data
Language:HTML33 9 23316
cortex-lab/sortingQuality
Functions to assess quality of spike sorting results
Language:MATLAB32 10 223
cortex-lab/widefield
Image processing and tools for widefield imaging
Language:MATLAB18 9 265
cortex-lab/phylib
Lightweight electrophysiological data analysis library
Language:Python13 12 1826
cortex-lab/npytools
[WIP] Command-line utilities to deal with NPY array files
Language:Python7 10 11
cortex-lab/psychofit
A module for fitting 2AFC psychometric data
Language:Jupyter Notebook5 12 04
cortex-lab/Transcriptomics
MATLAB software for analysis of single-cell RNA sequencing data, including probabilistic clustering, latent factor modeling, nbtSNE, visualization tools
Language:MATLAB5 10 04
cortex-lab/LabCI
Automation server for MATLAB & Python continuous integration, written in Node.js
Language:JavaScript4 3 611
cortex-lab/PinkRigs
Shared code for processing data on the pink rigs
Language:Python4 6 421
cortex-lab/wheelAnalysis
Language:MATLAB4 4 33
cortex-lab/alyx-matlab
Some MATLAB functions for easier interfacing with an Alyx database
Language:MATLAB3 8 573
cortex-lab/npy_matlab
Experimental code to read/write NumPy .NPY files in MATLAB
Language:Jupyter Notebook3 2 01
cortex-lab/signals
Intuitive behavioral neuroscience experiment design in MATLAB
Language:C3 8 04
cortex-lab/ALF
1 11 0
cortex-lab/alf2neuroscope
Converts ALF format to be read in neuroscope
Language:Python1 9 0
cortex-lab/phy-plugins
1 3 0
cortex-lab/pykilosort
[WIP] Python port of Kilosort 2
Language:Python1 3 0
cortex-lab/expDefinitions
experiment definition files (primarily Signals)
Language:MATLAB10 1
cortex-lab/Lilrig
code specific to Lilrig
Language:MATLAB11 1
cortex-lab/mmmGUI
"mouse movie manager" and GUI
Language:MATLAB11 42
cortex-lab/mpep
mPEP runs experiments where stimuli and timings can be decided in advance (i.e. not in the context of behavior)
Language:MATLAB9 0
cortex-lab/PoppyRig
Code for poppy rig
Language:MATLAB11 0
cortex-lab/WeekendWater
A script to post weekend water to Alyx and email users
Language:MATLAB9 0