Complete User Guide available: https://costasilvati.github.io/consexpression/
Tool for RNA-Seq analysis.
Make sure that you the standard GNU build environment installed, as well as Python, Bowtie2 and TopHat. Users of Ubuntu Linux simply type:
sudo apt-get install python
sudo apt-get install bowtie2
sudo apt-get install tophat
sudo apt-get install r-base
Make download of consexpression. Unzip the file , change to the unzipped directory.
Edit configuration file whit expermient data.
dao/CONFIG_tool.txt. A genome and GTF/GFF annotation file is necessary.
In consexpression directory type: python experiment.py dao/CONFIG_tool.txt