Defining input folder for QC

Question

Defining input folder for QC

wbryant opened this issue 4 years ago · 1 comments

The function runQC() will look for datasets in '/4ceData/Input', but I think the leading forward slash means that when it is run it will not pick up the datasets in the (relative) location '4ceData/Input'. I am running Windows 10 if that makes a difference.

I will try the 'no-docker' option and respond to this issue if I have more luck with that.

If I cannot get anything to work I would like to propose that optional arguments be added to manually specify the input and output data directories when running the QC.

Answer 1 · 2021-01-08T11:00:31.000Z

https://github.com/covidclinical/Phase2.1DataRPackage/tree/no-docker worked for me as it allows custom definition of the input folder.