data_MaSyMos
MaSyMos Dataloader for Covidgraph
Loads a subset of the data of https://sems.bio.informatik.uni-rostock.de/projects/masymos/index.html into Covidgraph
Part of the Covidgraph pipeline: https://github.com/covidgraph/motherlode
MaSyMoS is short for "Management System for Models and Simulations". It contains computational models in SBML and CellML format, simulation descriptions in SED-ML format and bio-ontologies. For a more detailed description see https://pubmed.ncbi.nlm.nih.gov/25754863/
Related Blog Post
https://healthecco.org/healthecco/masymos/
Run
Requirements:
- Running Neo4j DB
Docker
todo!
Local
Requirements:
- Python3 installed with pip
pip install -r reqs.txt
Provide source file (not provided atm until clarified if its non confidential)
export SOURCE_FILE_URL=https://<URL-TO-SOURCEFILE>
Set DB connection:
export NEO4J='{"host":"localhost","port":7687,"user":"neo4j","password":"wurscht"}'
Start script
python3 ./dataloader/main.py