incompatible SAMPLE tag and genotype column ID in mutect data

Question

incompatible SAMPLE tag and genotype column ID in mutect data

Closed this issue 8 years ago · 1 comments

need a way to map the sample names to tumor and normal. I have this worked out in general for all callers but some mutect files don't conform, the sample genotype columns use a different name that does not appear in the SAMPLE line

Answer 1 · 2016-04-09T03:05:24.000Z

Based on DNANexus run which is actually not valid for these purposes.