covingto/pancanmafmerge
A repo for code specifically tailored to the merger of the TCGA PanCan VCF (per-caller) files into a MAF file. This repository borrows from code available in other repositories and has some custom code to handle the merger. The project's main purpose is simply to do the merge for this one project and therefore has no features to make it more generic or maintainable beyond this goal.
Python
Issues
- 2
- 1
Chrom naming issues in MuTect VCFs
#8 opened by ckandoth - 9
Bug in Radia VCFs without matched RNA-seq
#7 opened by ckandoth - 2
Missing script?
#11 opened by kellrott - 0
- 1
- 6
better glob pattern for run-batch.py
#3 opened by covingto - 8
Unrecognized effect "?"
#4 opened by covingto - 6
Use Submodule for vcf2maf
#1 opened by kellrott