ckandoth
I'm an engineer that studies the pathogenesis of genetic diseases like cancer, in search of druggable targets, early diagnosis, and prevention.
UCLA HealthLos Angeles, CA, USA
Pinned Repositories
dotfiles
My bash dotfiles
variant-filter
A false-positive filter for variants called from massively parallel sequencing
dotfiles
Unix dotfiles for users of MSK compute
ngs-filters
Filters for false-positive mutation calls in NGS
roslin-core
Core of the Roslin pipeline
roslin-variant
Roslin is a reproducible and reusable workflow for Cancer Genomic Sequencing Analysis
vcf2maf
Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms
ckandoth's Repositories
ckandoth/variant-filter
A false-positive filter for variants called from massively parallel sequencing
ckandoth/dotfiles
My bash dotfiles
ckandoth/DRAGMAP
DRAGEN open-source mapper
ckandoth/parse-cosmic
Script to carefully parse through and standardize somatic variant lists from COSMIC
ckandoth/scarHRD