mskcc/ngs-filters

Issues

• Using tool on targeted gene panel sequencing data

  #28 opened 4 years ago by annahoge
  0

• Tweaks for normal-panel filter

  #27 opened 5 years ago by ckandoth
  0

• Citing your NGS filtering method

  #26 opened 5 years ago by cgab-ncc
  0

• ngs-filters: Add mappability and simpleRepeats to blacklisted regions

  #25 opened 5 years ago by Zuojian-Tang
  0

• Add mappability to blacklist filter

  #3 opened 6 years ago by kpjonsson
  1

• maf_fillout.py bug on full MAF

  #24 opened 6 years ago by evanbiederstedt
  1

• filter_low_conf.R

  #5 opened 6 years ago by md09
  1

• Common_variant filter not necessary if maf2maf

  #2 opened 7 years ago by kpjonsson
  2

• NA in all empty columns

  #4 opened 7 years ago by kk988
  1

• Make repo public?

  #6 opened 8 years ago by ckandoth
  2

• Add filter reason to FILTER column

  #1 opened 9 years ago by kpjonsson
  0