Pinned Repositories
Albany
Mission Albany
autogen-delivered-projects
This will generate manifest/project files for projects recently delivered in the LIMS
baby-shwr
Baby shower
bic-sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Variant-PostProcess
Postprocessing scripts for CBE Variant Pipeline
ngs-filters
Filters for false-positive mutation calls in NGS
vcf2maf
Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms
FixMultiInDel
Fix the multiallelic indels from haplotypecaller to deal with bug with overlapping in/dels
Variant-PostProcess
Postprocessing scripts for CBE Variant Pipeline
kk988's Repositories
kk988/Albany
Mission Albany
kk988/autogen-delivered-projects
This will generate manifest/project files for projects recently delivered in the LIMS
kk988/baby-shwr
Baby shower
kk988/bic-sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
kk988/KazBot
Maybe this will become a crypto-coin trading bot using gdax exchange
kk988/Variant-PostProcess
Postprocessing scripts for CBE Variant Pipeline
kk988/containers
This will hold various Dockerfiles for different bioinformatics tools in the hope to utilize for testing and pipeline building
kk988/master-file-validator
Script that will make sure the master file is correctly formatted.
kk988/nfcore_modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
kk988/rnaseq_as_analysis
Alternative Splicing analysis using docker and singularity
kk988/SpliceTools