cpanse
proteome informatics; ms comp; visualization; maps; code; reproducible research @hb9feb@fosstodon.org
Swiss federal institute of technology in Zurich47N 008E
Pinned Repositories
dlomix
Python framework for Deep Learning in Proteomics
fcc
An automated rule-based processing tool for life science data
koina-Rclient
R lang client for koina (DLOmix) service
meetings
collection of c4l proteome informatics related material
NestLink
Engineered Peptide Barcodes for In-Depth Analyses of Binding Protein Ensembles - replication code
protViz
Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics
recmap
An algorithm to draw rectangular statistical cartograms - CRAN package
prolfqua
Differential Expression Analysis tool box R lang package for omics data
rawDiag
Brings Orbitrap mass spectrometry data to life; multi-platform, fast and colorful R package
rawrr
Access Orbitrap data in R lang using C# mono assembly - bioconductor package
cpanse's Repositories
cpanse/recmap
An algorithm to draw rectangular statistical cartograms - CRAN package
cpanse/protViz
Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics
cpanse/koina-Rclient
R lang client for koina (DLOmix) service
cpanse/rawDiag
git mirror of the bioconductor version
cpanse/uvpd
Ultra HRMS in combination with UVPD fragmentation for enhanced structural identification of organic micropollutants
cpanse/1016
cpanse/2023-EuBIC-MS-proc
Proceedings EuBIC-MS dev meeting 2023 (JPROT-D-24-00190)
cpanse/alphafold
Open source code for AlphaFold.
cpanse/alphapept
A modular, python-based framework for mass spectrometry. Powered by nbdev.
cpanse/alphatims
An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck Institute of Biochemistry.
cpanse/bfabricPy
API and commad line tools for b-fabric
cpanse/CD-MRG-PlatePlanner
Python package to create multi-well plate layouts for specimen sample data. Automatically distributes quality control samples according to scheme in config file.
cpanse/client
Triton Python, C++ and Java client libraries, and GRPC-generated client examples for go, java and scala.
cpanse/cpanse
cpanse/dlomix-service-testing
contains some basic test scripts
cpanse/koina
cpanse/koinar
Koina R client
cpanse/Mistle
cpanse/oktoberfest
Public repo oktoberfest
cpanse/opentims
Open-source C++ and Python module for opening binary timsTOF data files.
cpanse/prolfqua
R package for protein Label-Free Quantification
cpanse/ProteoBench
ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to allow a continuous, easy, and controlled comparison of proteomics data analysis workflows.
cpanse/pwiz
The ProteoWizard Library is a set of software libraries and tools for rapid development of mass spectrometry and proteomic data analysis software.
cpanse/RawFileReader
cpanse/rawrr
Computational analysis of raw-formatted mass spectrometry data in R. Brings your Orbitrap data to life!
cpanse/sage
Proteomics searching so fast it feels like magic
cpanse/saving-willy-space
cpanse/shinyStore
R package that adds HTML5 Local Storage support to Shiny
cpanse/Spectra
Low level infrastructure to handle MS spectra
cpanse/timsconvert