Hello world. We are in the process of moving our code and documentation to github. Please note that:
- Definative documentation for OpenMIMS is here on Github in the project wiki.
- If you find a bug please submit an issue. If you don't have/want a github account, you can submit an issue via gitreports
OpenMIMS is an ImageJ plugin to open, process and analyze images captured with NanoSIMS 50 & 50L secondary ion mass spectrometers (Cameca). The plugin was developed at the National Resource for Imaging Mass Spectrometry (NRIMS) and development continues at the BWH Center for NanoImaging Images and/or stacks of images for up to 7 different isotopes can be opened, analyzed and saved (more if using peak-switching). All metadata saved in the original file are preserved. Image ratios and Hue-Saturation-Intensity (HSI) maps of any combination of isotopes can be displayed and data from any number of Regions of Interest (ROIs) extracted, analyzed and tabulated for single images or entire stacks.