crhisto
Ph.D. Researcher, ML and Computational Epigenomics IMPRS-IS, Cyber Valley, Tübingen University | Dundee University
Tübingen UniversityTübingen, Germany
Pinned Repositories
Biobase
Biobase repository: https://github.com/Bioconductor/Biobase with support for sparse matrix
CRC_organoids_and_fibroblasts_notebook
Deconvolution of CRC in organoid and fibroblast bulk data identifying epithelial cell types proportions
crhisto.github.io
Github pages
DecoFlex
DecoFlex deconvolution method for Omic data implemented as DecoFlexR
MeDeCom
Decomposition of heterogeneous DNA methylomes
MuSiC
Multi-subject Single Cell Deconvolution
NMMFlex
Implementation of the Non-negative Multiple Matrix Factorization (NMMF) algorithm proposed in Takeuchi et al, 2013 with some modifications. There is a python native version NMMFlexPy and a R wrapper NMMFlexR
SCDC
SCDC project, originally on: https://github.com/meichendong/SCDC. Support sparse matrix among other additions.
thymus_NPM-ALK_notebook
R Notebook with scripts for running the deconvolution of thymus bulk data identifying T-cell proportions
xbioc
Project xbioc originally on: https://github.com/renozao/xbioc with support for sparse matrix
crhisto's Repositories
crhisto/DecoFlex
DecoFlex deconvolution method for Omic data implemented as DecoFlexR
crhisto/Biobase
Biobase repository: https://github.com/Bioconductor/Biobase with support for sparse matrix
crhisto/CRC_organoids_and_fibroblasts_notebook
Deconvolution of CRC in organoid and fibroblast bulk data identifying epithelial cell types proportions
crhisto/crhisto.github.io
Github pages
crhisto/MeDeCom
Decomposition of heterogeneous DNA methylomes
crhisto/MuSiC
Multi-subject Single Cell Deconvolution
crhisto/NMMFlex
Implementation of the Non-negative Multiple Matrix Factorization (NMMF) algorithm proposed in Takeuchi et al, 2013 with some modifications. There is a python native version NMMFlexPy and a R wrapper NMMFlexR
crhisto/SCDC
SCDC project, originally on: https://github.com/meichendong/SCDC. Support sparse matrix among other additions.
crhisto/thymus_NPM-ALK_notebook
R Notebook with scripts for running the deconvolution of thymus bulk data identifying T-cell proportions
crhisto/xbioc
Project xbioc originally on: https://github.com/renozao/xbioc with support for sparse matrix