cristoichkov/GBS_Bioinf_Process_Mamm

Issues

• Final comments to repository

  #27 opened 5 years ago by AliciaMstt
  2

• README preliminary evaluation

  #23 opened 5 years ago by Rodolfo47
  4

• How to test monophyly in R?

  #26 opened 5 years ago by cristoichkov
  5

• Write Final_project.md

  #21 opened 5 years ago by cristoichkov
  0

• Fix paths to bin

  #24 opened 5 years ago by AliciaMstt
  1

• Extract a list of nodes and its tip labels from a tree

  #22 opened 5 years ago by cristoichkov
  1

• How to get the genetic distance between individuals of the same sampling location

  #25 opened 5 years ago by cristoichkov
  6

• STRUCTURE analyses on unlinked SNPs

  #20 opened 5 years ago by cristoichkov
  0

• Species-tree & species-delimitation using bpp

  #19 opened 5 years ago by cristoichkov
  0

• Demultiplex GBS sequences

  #6 opened 5 years ago by cristoichkov
  1

• Standardize parameters in ipyrad

  #7 opened 5 years ago by cristoichkov
  1

• Prove the script with the prove data of ipyrad

  #8 opened 5 years ago by cristoichkov
  0

• Prove the script with my own data.

  #9 opened 5 years ago by cristoichkov
  1

• Create the result plots of standardizing parameters

  #10 opened 5 years ago by cristoichkov
  1

• Maximum-likelihood phylogenetic inference

  #11 opened 5 years ago by cristoichkov
  1

• Ordenar mi repo

  #16 opened 5 years ago by cristoichkov
  0

• Modify the script standardize_parameters.sh

  #13 opened 5 years ago by cristoichkov
  1

• Runs threshold parameter

  #14 opened 5 years ago by cristoichkov
  1

• Runs mindepth parameter

  #15 opened 5 years ago by cristoichkov
  2

• Extract table of ipyrad stats file 9-sep

  #17 opened 5 years ago by cristoichkov
  8

• Inferring species trees with tetrad

  #12 opened 5 years ago by cristoichkov
  0

• Phylogenetic analysis

  #5 opened 5 years ago by cristoichkov
  0

• Demultiplex

  #1 opened 5 years ago by cristoichkov
  0

• Filtering

  #2 opened 5 years ago by cristoichkov
  0

• Optimization of The minimum number of Samples

  #3 opened 5 years ago by cristoichkov
  0

• Optimization of cluster threshold

  #4 opened 5 years ago by cristoichkov
  0