/gobioinfo

my golang bioinformatics package

Primary LanguageGoBSD 3-Clause "New" or "Revised" LicenseBSD-3-Clause

gobioinfo

Build Status Coverage Status

my golang bioinformatics package

version 0.0.-1

this is all experimental code which is not all totally idiomatic go. I am learning as I go along, so take this as you will.

I would recommend the great Biogo package if you are looking for a more mature bioinformatics package (although they don't have a semiglobal alignment algorithm), which is why I struck out on my own.

Components so far:

  • semiglobal alignment algorithm (and pairwise alignment struct)
  • a FASTQ scanner structure for scanning a FASTQ file read by read

To Be Added

  • FASTQ Reader and Writer that work with unix pipes (eg are general io.Reader and io.Writers)
  • better sequence structs