croeder
Software developer / data wrangler working with clinical data, building infrastructure for harmonizing and querying.
Denver, CO
croeder's Stars
rasbt/LLMs-from-scratch
Implementing a ChatGPT-like LLM in PyTorch from scratch, step by step
jashkenas/backbone
Give your JS App some Backbone with Models, Views, Collections, and Events
synthetichealth/synthea
Synthetic Patient Population Simulator
aws-samples/aws-modern-application-workshop
A tutorial for developers that want to learn about how to build modern applications on top of AWS. You will build a sample website that leverages infrastructure as code, containers, serverless code functions, CI/CD, and more.
aws-samples/startup-kit-templates
CloudFormation templates to accelerate getting started on AWS.
LinuxForHealth/FHIR
The LinuxForHealth FHIR® Server and related projects
linkml/linkml
Linked Open Data Modeling Language
tk0miya/testing.postgresql
cqframework/clinical_quality_language
Clinical Quality Language (CQL) is an HL7 specification for the expression of clinical knowledge that can be used within both the Clinical Decision Support (CDS) and Clinical Quality Measurement (CQM) domains. This repository contains complementary tooling in support of that specification.
kirpit/django-sample-app
Minimal sample application to start developing your web project immediately on Django framework.
OHDSI/WhiteRabbit
WhiteRabbit is a small application that can be used to analyse the structure and contents of a database as preparation for designing an ETL. It comes with RabbitInAHat, an application for interactive design of an ETL to the OMOP Common Data Model with the help of the the scan report generated by White Rabbit.
FedericoCeratto/bottle-cork
Authentication module for the Bottle and Flask web frameworks
sashkab/homebrew-python
Homebrew tap for Python versions.
OHDSI/ETL-Synthea
A package supporting the conversion from Synthea CSV to OMOP CDM
OHDSI/CohortMethod
An R package for performing new-user cohort studies in an observational database in the OMOP Common Data Model.
MechanicalRabbit/DataKnots.jl
an extensible, practical and coherent algebra of query combinators
dlinzer/poLCA
Polytomous Variable Latent Class Analysis (R package)
aws-samples/aws-dbs-refarch-edw
Repository for AWS DBS Reference Architectures - Enterprise Data Warehousing
obiba/opal
OBiBa’s core database application for biobanks or epidemiological studies.
aws-samples/aws-rds-snapshot-management
A serverless notification mechanism to manage Amazon RDS manual snapshots for both RDS Instances and Aurora Clusters. The solution manages creatiton of manual snapshot, deletion of old snapshots, and finally send a notification email. Email subscribers are notified with a list of newly created manual snapshots and older deleted snapshots.
biocaddie/WG3-MetadataSpecifications
WG3 Metadata Specification
amazon-archives/harmonize-search-analyze
Code samples related to "Harmonize, Search, and Analyze Loosely Coupled Datasets on AWS" (https://aws.amazon.com/blogs/big-data/harmonize-search-and-analyze-loosely-coupled-datasets-on-aws/) published on the Big Data Blog
OHDSI/AchillesWeb
Interactive web site for reviewing the results of the Achilles R package.
CUD2V/kungfauxpandas
data synthesis tool to simplify privacy preservation
ntschutta/jQuery_workshop
All the code that's fit to, well, code for my jQuery workshop
OHDSI/OSIM-v5
An updated version of OSIM for CDM v5
omerio/ecarf
Elastic Cloud-based RDF Triplestore
ty-w/FLAME
ga4gh-metadata/SchemaBlocks
Building Blocks and Schemas for GA4GH Implementations
iantruslove/python-logging
Quick sensible python logging setup