crollinson
Forest Ecologist. Expertise in forest ecology, global change, community ecology, and synthesizing field data and models.
The Morton ArboretumLisle, IL
Pinned Repositories
canopy_class_climate
sensitivity analysis of eastern forest climate sensitivities
ED2
Ecosystem Demography Model
ED2_Erelax
ED2 version with relaxed leaf energy budget requirements
ED_PalEON
Everything needed to run perform the PalEON ED runs
MetDownscaling_Manuscript
Repository of met downscaling workflow plus analyses for manuscript
R_Functions
Various functions that come in handy; mostly working with GAMMs
EcosystemVariability
Model-Data comparisons of ecosystem stability across space and time
MIP_Utils
Some handy functions and workflows for working with PalEON MIP output
modeling_met_ensemble
Generation of downscaled met driver ensemble for uncertainty analysis and data assimilation
PalEON_MIP2_Region
General scripts for accessing & synthesizing ecosystem model output from the PalEON Regional MIP
crollinson's Repositories
crollinson/MetDownscaling_Manuscript
Repository of met downscaling workflow plus analyses for manuscript
crollinson/ED_PalEON
Everything needed to run perform the PalEON ED runs
crollinson/canopy_class_climate
sensitivity analysis of eastern forest climate sensitivities
crollinson/ED2
Ecosystem Demography Model
crollinson/ED2_Erelax
ED2 version with relaxed leaf energy budget requirements
crollinson/R_Functions
Various functions that come in handy; mostly working with GAMMs
crollinson/ED_process_output
Code for processing and plotting the output from the ED2 model
crollinson/ED_Processing
Scripts used to process ED output for PalEON Project
crollinson/Establishment_SDMs
crollinson/Growth-Models
Maximum Likelihood models of tree growth in the Central Appalachians
crollinson/initial_ensemble
Scripts for generating an ensemble of initial conditions for data assimilation runs. These are developed for ED2, but will hopefully be generalizeable to other ecosystem & vegetation models.
crollinson/Linkages
The original version of Linkages can be downloaded at http://daac.ornl.gov/MODELS/guides/LINKAGES.html. I have made some modifications to the original code. I will include a description of each change in each commit.
crollinson/met_utils
Scripts developed to facilitate downloading and interacting with various met products. Some of these are custom versions of scripts that eventually made their way into Pecan (pecanproject.org)
crollinson/Paleon-NPP
Code for calculating annual NPP from tree rings
crollinson/PalEON_MIP_Code
Code used in the Paleon Model Inter-comparison Project
crollinson/pecan
The Predictive Ecosystem Analyzer (PEcAn) is an integrated ecological bioinformatics toolbox.
crollinson/rnpn
Wrapper to the National Phenology Network database API