cropsinsilico

Pinned Repositories

catherder
A tool for syncing different project management tools
Language:Python2 3 00
cis-girder-plugin
Adds API endpoints for interacting with the Crops in Silico framework.
Language:Python1 2 03
cis-ui
Prototype UI for Crops in Silico
Language:HTML4 3 52
CiS2021-hackathon
Materials for the Hackathon at the 2021 Crops in Silico Symposium & Workshop
Language:Jupyter Notebook2 5 33
jupyterlab_nodeeditor
Language:Python6 5 174
ODE_FBA_Photosynthesis2021
Scripts supporting the soon-to-be-submitted ODE-FBA photosynthesis work
Language:Jupyter Notebook1 7 01
ProtTranslationModel_CO2
Language:Python1 4 02
SorghumVoxelCarving
Implementation of Sorghum 3D reconstruction and skeletonization.
Language:C++8 7 06
Soybean-BioCro
Language:R2 6 11
yggdrasil
A framework for connecting scientific models across languages and scales.
Language:Python33 4 4423

cropsinsilico's Repositories

cropsinsilico/yggdrasil
A framework for connecting scientific models across languages and scales.
Language:Python33 4 4423
cropsinsilico/SorghumVoxelCarving
Implementation of Sorghum 3D reconstruction and skeletonization.
Language:C++8 7 06
cropsinsilico/jupyterlab_nodeeditor
Language:Python6 5 174
cropsinsilico/catherder
A tool for syncing different project management tools
Language:Python2 3 00
cropsinsilico/CiS2021-hackathon
Materials for the Hackathon at the 2021 Crops in Silico Symposium & Workshop
Language:Jupyter Notebook2 5 33
cropsinsilico/Soybean-BioCro
Language:R2 6 11
cropsinsilico/ePhotosynthesis
Language:MATLAB1 5 0
cropsinsilico/ODE_FBA_Photosynthesis2021
Scripts supporting the soon-to-be-submitted ODE-FBA photosynthesis work
Language:Jupyter Notebook1 7 01
cropsinsilico/ProtTranslationModel_CO2
Language:Python1 4 02
cropsinsilico/Soybean-Sensitivity
Language:R0 5 00
cropsinsilico/AIFoundry-2023
Materials used in the yggdrasil demonstration at the AI Foundry short course in 2023
Language:Jupyter Notebook4 0
cropsinsilico/BML-yggdrasil
Language:C++
cropsinsilico/C3-metabolic-and-leaf-model
Language:MATLAB5 03
cropsinsilico/deploy-dev
Collection of scripts used for deploying WT locally
Language:Jupyter Notebook1 0
cropsinsilico/ePhotosynthesis_C
Language:C++6 2
cropsinsilico/example-fakemodel
A fake model for use in testing and examples.
Language:Python3 0
cropsinsilico/FSPM2020_yggdrasil_workshop
Materials for the FSPM2020 yggdrasil workshop
Language:Jupyter Notebook6 0
cropsinsilico/GRN_Model
Language:R5 02
cropsinsilico/hothouse
Language:Python2 03
cropsinsilico/jupyterlab_cis
Crops in Silico JupyterLab extension
Language:Python4 01
cropsinsilico/model_integrations
A central location to store materials for model integrations that are publicly available.
6 01
cropsinsilico/nodeeditor-controls
Language:Vue5 01
cropsinsilico/python-rapidjson
Python wrapper around rapidjson
Language:C++1 0
cropsinsilico/r-base-feedstock
A conda-smithy repository for r-base.
Language:Shell1 0
cropsinsilico/r-reticulate-feedstock
A conda-smithy repository for r-reticulate.
Language:Shell1 0
cropsinsilico/rapidjson
A fast JSON parser/generator for C++ with both SAX/DOM style API
Language:C++1 01
cropsinsilico/tissue-specific-FBA-models
Language:Jupyter Notebook3 0
cropsinsilico/yggdrasil-feedstock
A conda-smithy repository for yggdrasil.
1 0
cropsinsilico/yggdrasil_models
Catalog of models registered via the submission form located at https://yggdrasil-models.onrender.com
5 01
cropsinsilico/yggdrasil_models_test
Repo for testing https://yggdrasil-models.onrender.com submission
5 01