Pinned Repositories
5loclung
Custom codes accompanying single cell spatial transcriptomic study on the healthy human lung
altair
Declarative statistical visualization library for Python
anndata
Annotated data.
annotated_deep_learning_paper_implementations
🧑🏫 59 Implementations/tutorials of deep learning papers with side-by-side notes 📝; including transformers (original, xl, switch, feedback, vit, ...), optimizers (adam, adabelief, ...), gans(cyclegan, stylegan2, ...), 🎮 reinforcement learning (ppo, dqn), capsnet, distillation, ... 🧠
AnVILWorkshop
AnVIL/Terra workshop for BioC2020
ArchR
ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)
ascat
ASCAT copy number R package
Asgard
dynamo-release
Inclusive model of expression dynamics with metabolic labeling based scRNA-seq / multiomics, vector field reconstruction and differential geometry analyses
scENDO_scOVAR_2020
This repository holds the scripts used to analyze the data presented in "A multi-omic single-cell landscape of human gynecologic malignancies", Regner, et al. 2021
crsky1023's Repositories
crsky1023/5loclung
Custom codes accompanying single cell spatial transcriptomic study on the healthy human lung
crsky1023/annotated_deep_learning_paper_implementations
🧑🏫 59 Implementations/tutorials of deep learning papers with side-by-side notes 📝; including transformers (original, xl, switch, feedback, vit, ...), optimizers (adam, adabelief, ...), gans(cyclegan, stylegan2, ...), 🎮 reinforcement learning (ppo, dqn), capsnet, distillation, ... 🧠
crsky1023/Auto-GPT
An experimental open-source attempt to make GPT-4 fully autonomous.
crsky1023/bioinformatics_tool_recommendation
crsky1023/BioRookie_Article
Synchronize the bioinformatics knowledge-sharing content in the WeChat public account to GitHub to facilitate everyone's systematic learning
crsky1023/cellDancer
crsky1023/chatgpt_academic
科研工作专用ChatGPT拓展，特别优化学术Paper润色体验，支持自定义快捷按钮，支持markdown表格显示，Tex公式双显示，代码显示功能完善，新增本地Python工程剖析功能/自我剖析功能
crsky1023/COSG
Accurate and fast cell marker gene identification with COSG
crsky1023/dictys
Context specific and dynamic gene regulatory network reconstruction and analysis
crsky1023/figeno
Tool for making genomics figures
crsky1023/human
crsky1023/IndepthPathway
crsky1023/networkGWAS
Method for performing genome-wide association like studies on neighborhoods identified on biological networks relevant for the phenotype of interest.
crsky1023/NeuronChat
crsky1023/Palantir
Single cell trajectory detection
crsky1023/phenonaut
A tool for exploration of multiomic phenotypic space
crsky1023/professional-programming
A collection of learning resources for curious software engineers
crsky1023/SCA
Code Repositories for SCA
crsky1023/scBasset
Sequence-based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.
crsky1023/scDisInFact
crsky1023/scDrug
scDrug: From scRNA-seq to Drug Repositioning
crsky1023/scg_lib_structs
Collections of library structure and sequence of popular single cell genomic methods
crsky1023/scGPT
crsky1023/SCP
SCP provides a comprehensive set of tools for single cell data processing and downstream analysis.
crsky1023/scScalpChromatin
crsky1023/seqspec
machine-readable file format for genomic library sequence and structure
crsky1023/SpaceMarkers
An R/Bioconductor software tool to identify genes associated with latent space interactions in spatial transcriptomics.
crsky1023/stLearn
A novel machine learning pipeline to analyse spatial transcriptomics data
crsky1023/TIGON
crsky1023/TwoSampleMR
R package for performing 2-sample MR using MR-Base database