cruk-mi/mesa

Issues

• `combineQsets` mingles column names

  #30 opened 22 days ago
  6

• Typo when adding Medip enrichment values

  #27 opened a month ago
  1

• Adding GC and mappability with incompatible bin sizes massively duplicates CNV regions in the resulting `qseaSet`

  #26 opened a month ago
  14

• Memory usage can be excessive

  #25 opened a month ago
  7

• The HMMcopy parameters (GC and mappability) are unclear

  #22 opened 2 months ago
  0

• `makeQset` with CNV method `MeCap` does not properly pass fragment length to `qsea::addCNV`

  #20 opened 3 months ago
  2

• `MeCap` is not mentioned as an available method in the help of the `makeQset` function.

  #19 opened 3 months ago
  0

• `plotRegionsHeatmap` fails if `regionsToOverlap` has multiple regions that overlap the same 300bp window.

  #18 opened 4 months ago
  0

• Catch biomaRt errors in `plotGeneHeatmap`

  #15 opened 7 months ago
  0

• Function to select top DMRs between multiple comparisons

  #13 opened 7 months ago
  0

• Change default shape for PCA/UMAP plotting functions to filled circle (21)

  #12 opened 8 months ago
  0

• Remove `samples` from output of dimensionality reduction functions

  #10 opened 8 months ago
  0

• plotPCA fails if shape has an NA value but NAshape is not specified

  #9 opened 8 months ago
  0

• plotCorrelationMatrix should be swapped from pheatmap to ComplexHeatmap

  #8 opened 8 months ago
  0

• Create documentation for new object classes

  #7 opened 8 months ago
  0

• exceeding the memory limit when calculating DMRs

  #3 opened 8 months ago
  1

• function addMedipsEnrichmentFactors() terminates with error

  #1 opened 8 months ago
  2