csangara
PhD student in Bioinformatics at the Saeys Lab, VIB Center for Inflammation Research.
Ghent UniversityGhent
Pinned Repositories
DSTG
Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence
Dynamic_NicheNet
ebi-project
github-actions-for-ci
hello-github-actions
multinichenetr
Neural-Networks
nichenetr
NicheNet: predict active ligand-target links between interacting cells
plength
Automated analysis of rice seedlings
RCTD
csangara's Repositories
csangara/DSTG
Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence
csangara/Dynamic_NicheNet
csangara/ebi-project
csangara/github-actions-for-ci
csangara/hello-github-actions
csangara/multinichenetr
csangara/Neural-Networks
csangara/nichenetr
NicheNet: predict active ligand-target links between interacting cells
csangara/plength
Automated analysis of rice seedlings
csangara/RCTD
csangara/scriabin
Analysis of cell-cell communication at single-cell resolution
csangara/sknw
build net work from skeleton image (2D-3D)
csangara/stereoscope
Spatial mapping of cell types by integration of transcriptomics data
csangara/STMOZOO
csangara/STRIDE
STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using single-cell transcriptomics data.
csangara/synthvisium
synthvisium: package to generate synthetic Visium-like spot data
csangara/synthvisium-1
synthvisium: package to generate synthetic Visium-like spot data
csangara/thesis