Pinned Repositories
Absolut
Unconstrained lattice antibody-antigen bindings generator
airrtm
desygnator
desYgnator is a computational method for comparing AIRR-seq samples. deYgnator stands for DEtection of SYstematic differences in GeneratioN of Adaptive immune recepTOr Repertoires
developability_profiling
manuscript_bulkseq-scseq-abseq_integration
manuscript_insilico_antibody_generation
manuscript_progress_challenges_on-demand_antibody
mwds_calculator
Artificial Bee Colony - Estimation of Distribution Algorithm (ABC-EDA) is an algorithm to compute minimum weight dominating sets of undirected weighted networks. Adapted from Singh's and Shetgaonkar's publication, "Hybridization of Artificial Bee Colony Algorithm with Estimation of Distribution Algorithm for Minimum Weight Dominating Set Problem" published as part of the Advances in Intelligent Systems and Computing book series (AISC, volume 1270) in 2020.
negative-class-optimization
T1D-TCR
This repository contains the source code and associated resources developed for the research paper titled “Identification of a type 1 diabetes-associated T cell receptor repertoire signature from the human peripheral blood”. The code primarily focuses on analyzing TCR repertoire associated with Type 1 Diabetes.
Greiff Lab – Computational Systems Immunology's Repositories
csi-greifflab/Absolut
Unconstrained lattice antibody-antigen bindings generator
csi-greifflab/manuscript_insilico_antibody_generation
csi-greifflab/developability_profiling
csi-greifflab/manuscript_progress_challenges_on-demand_antibody
csi-greifflab/mwds_calculator
Artificial Bee Colony - Estimation of Distribution Algorithm (ABC-EDA) is an algorithm to compute minimum weight dominating sets of undirected weighted networks. Adapted from Singh's and Shetgaonkar's publication, "Hybridization of Artificial Bee Colony Algorithm with Estimation of Distribution Algorithm for Minimum Weight Dominating Set Problem" published as part of the Advances in Intelligent Systems and Computing book series (AISC, volume 1270) in 2020.
csi-greifflab/negative-class-optimization
csi-greifflab/airrtm
csi-greifflab/manuscript_bulkseq-scseq-abseq_integration
csi-greifflab/airrtm_data
csi-greifflab/desygnator
desYgnator is a computational method for comparing AIRR-seq samples. deYgnator stands for DEtection of SYstematic differences in GeneratioN of Adaptive immune recepTOr Repertoires
csi-greifflab/HackathonCPH2021
Repository for the Copenhagen Bioinformatics Hackathon 2021 Protein Edition. (VAE, CLustering)
csi-greifflab/manuscript_short_motif_data_processing_supplementary
csi-greifflab/manuscript_short_motif_experimental_computational_supplementary
csi-greifflab/Preexisting-immunity-influenza-mice
Code, figures, and processed data for the manuscript
csi-greifflab/T1D-TCR
This repository contains the source code and associated resources developed for the research paper titled “Identification of a type 1 diabetes-associated T cell receptor repertoire signature from the human peripheral blood”. The code primarily focuses on analyzing TCR repertoire associated with Type 1 Diabetes.
csi-greifflab/embedairr
Tool to extract sequence representations from protein language models
csi-greifflab/Systematic-benchmarking-of-mass-spectrometry-based-antibody-sequencing-reveals-methodological-biases