Pinned Repositories
behaviorAssayChamberSCAD
design files for a chamber to assay drosophila behavior re: food & ovipositioning preference
ComparativeDeBruijner
some code for constructing phylogenies from next-gen DNASeq by means of deBruijn graphs
cowtools
an R package of miscellaneous utilities
EJgrepper
Finding & comparing end-joining signals in recombination mutants
exRNA
hello-world
ola
Lindenmeyer-system
A simple Lindenmeyem system generator
PopPsiSeq
Population-based framework for introgression/selection/resequencing experiments
PsiSeq2
An update to PSISeq (Earley & Jones 2011)
VolkanLab_BehaviorGenetics
Behavioral Genetics in Drosophila: RNA-Seq analysis pipeline
csoeder's Repositories
csoeder/behaviorAssayChamberSCAD
design files for a chamber to assay drosophila behavior re: food & ovipositioning preference
csoeder/PsiSeq2
An update to PSISeq (Earley & Jones 2011)
csoeder/ComparativeDeBruijner
some code for constructing phylogenies from next-gen DNASeq by means of deBruijn graphs
csoeder/cowtools
an R package of miscellaneous utilities
csoeder/EJgrepper
Finding & comparing end-joining signals in recombination mutants
csoeder/exRNA
csoeder/hello-world
ola
csoeder/historical-climatology-toolkit
A couple of hand-rolled scripts for doing recent-history climate analysis
csoeder/Human-Denovo-Polymorphs
A bioinformatics pipeline for the discovery of polymorphic de novo genes in H. sapiens
csoeder/Lindenmeyer-system
A simple Lindenmeyem system generator
csoeder/PopPsiSeq
Population-based framework for introgression/selection/resequencing experiments
csoeder/VolkanLab_BehaviorGenetics
Behavioral Genetics in Drosophila: RNA-Seq analysis pipeline
csoeder/pseudoobscureAmplicon
detecting crossovers in backcrosses from Samuk et al 2020
csoeder/RNASeq-Annotation-Sieve
Part of a bioinformatics pipeline, this bundle processes RNA-Seq reads, creating transcript assemblies and removing those corresponding to genome annotations.
csoeder/snip-suite
A collection of scripts for comparing SNPs and other genomic variation between two samples.
csoeder/snowdaze
Data processing and analysis for school weather closings as a climate/infrastructure impact measure
csoeder/xPlod
investigation into the evolutionary origins of XPOD