/PYME-splitter-example-data

GNU General Public License v3.0GPL-3.0

PYME-splitter-example-data

This repository contains a few PYME data files to test a few features of splitter support in PYME.

Currently contains:

  • 28_11_series_A-extracted.h5: this one raises an error upon Unsplit
  • 28_11_series_B-extracted.h5: also raises an error upon Unsplit
  • 28_11_series_C-extracted.h5: this one works as anticipated upon Unsplit

Of note, IMHO, all should generate split data with a width of 550 pixels, just ROI height varies between series.

When using PYME.localization.splitting.get_splitter_rois() all three cases work fine, e.g. in a shell, e.g. with 28_11_series_A-extracted.h5, ones gets:

from PYME.localization.splitting import get_splitter_rois
xgs, xrs, ygs, yrs = get_splitter_rois(image.mdh, image.data_xytc.shape)
image.data_xytc[xgs,ygs,0,0].shape
(550, 776, 1)
image.data_xytc[xrs,yrs,0,0].shape
(550, 776, 1)