Pinned Repositories
16S_QIIME2
Snakemake based 16S QIIME2 pipeline
ABYSSS
decontam
dnabc
Identify DNA barcodes in high-throughput sequencing data files
github_tutorial
A hands on forking, cloning, pulling, pushing, merging tutorial.
illqc
Process shotgun metagenomic DNA data for quality
meta_summary
Summary of metadata
PathwayAbundanceFinder
A short wrapper for finding presence/absence/abundance of pathways from metagenomic data.
PhylogeneticProfiler
A short wrapper for profiling composition of microbial communities from shotgun metagenomic data.
reportGeneration
functions to generate basic bioinformatics overview report
ctanes's Repositories
ctanes/16S_QIIME2
Snakemake based 16S QIIME2 pipeline
ctanes/ABYSSS
ctanes/decontam
ctanes/dnabc
Identify DNA barcodes in high-throughput sequencing data files
ctanes/github_tutorial
A hands on forking, cloning, pulling, pushing, merging tutorial.
ctanes/illqc
Process shotgun metagenomic DNA data for quality
ctanes/meta_summary
Summary of metadata
ctanes/PathwayAbundanceFinder
A short wrapper for finding presence/absence/abundance of pathways from metagenomic data.
ctanes/PhylogeneticProfiler
A short wrapper for profiling composition of microbial communities from shotgun metagenomic data.
ctanes/reportGeneration
functions to generate basic bioinformatics overview report
ctanes/abdel_mohsen_hiv_gut_aging_paper
ctanes/betrnet_b2_paper
ctanes/facciabene_sbrt_paper
ctanes/igram_abx_paper
ctanes/mirix-paper
ctanes/sbx_gene_clusters
ctanes/sbx_mapping_withFilter
ctanes/sbx_vsearch
Sunbeam extension for Vsearch (https://github.com/torognes/vsearch)
ctanes/seqBackup
ctanes/ShotgunPipeline
ctanes/silverman_IgA_deficiency_paper
ctanes/TagSequencingPipeline
ctanes/thaiss_scripts
ctanes/unassigner
Type strain identification for 16S reads
ctanes/unassigner_paper_figures
ctanes/usedist
Functions for distance matrix objects in R.