Pinned Repositories
approximatize
Approximatize lets you code while drunk ;-)
banpipe
BANpipe is logic-based pipeline programming language
chmm
Framework for Constraint Hidden Markov Models in PRISM. Includes Pair HMM example.
codex
Simple tool for creating source-code intensive presentations and courses
genome2prolog
Converts genome (fasta) data to prolog facts
grspwr
power calculator for Genetic Risk Scores (GRS)
modemserver
A multithreaded modem server that receives SMS messages though sockets via modems connected to a Moxa box.
QsubCmds.jl
Run Julia external (shell) commands on a HPC cluster
sdcg
Stochastic Definite Clause Grammars
cth's Repositories
cth/banpipe
BANpipe is logic-based pipeline programming language
cth/sdcg
Stochastic Definite Clause Grammars
cth/QsubCmds.jl
Run Julia external (shell) commands on a HPC cluster
cth/grspwr
power calculator for Genetic Risk Scores (GRS)
cth/assemble-yourself
cut and paste bioinformatics -- literally
cth/imputation_scripts
cth/simplenn
A simplistic neural network library with support for backpropagation training
cth/vcf-misc-tools
Another set of tools working with VCF files.
cth/wunderbar
Identify mislabeled samples in genotype data
cth/BGZFStreams.jl
BGZF Stream
cth/ClusterManagers.jl
cth/cth
cth/cthmisc.jl
cth/DataStructures.jl
Julia implementation of Data structures
cth/GLM.jl
Generalized linear models in Julia
cth/ImputationQualityScores.jl
Quality metrics for evaluation of genotype imputations
cth/impute-power
Calculation of statistical power in imputed genotypes
cth/julia
The Julia Language: A fresh approach to technical computing.
cth/Julog.jl
Experimenting with probabilistic extensions to a Julog
cth/merge-imputations
cth/METADATA.jl
Metadata for registered Julia packages.
cth/pimatch
cth/PlinkPlumber.jl
Plumbing to integrate the use of plink and similar tools in Julia
cth/PLP2017-submission
PLP2017-submission
cth/qqman
R code for creating Manhattan plots and Q-Q plots for GWAS
cth/R_Functions
cth/rvtests
Rare variant test software for next generation sequencing data
cth/stable-match
Stable matching of cases and controls
cth/vcftools
A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.
cth/YTables.jl
Markup and markdown formatting for Julia DataFrames