Bioinformatics pipelines framework, writen in python2.
- python2
- setuptools
- graphviz
- PyQt4 - If you want use GUI
$ git clone https://github.com/semkagtn/pypipe.git
$ cd pypipe/pypipe-core
$ python2 setup.py build
$ sudo python2 setup.py install
- Installation for current user only:
./setup.py install --user - How to write pipelines: see example.py
- How to add support of new tool: see pypipe/tools/* files
- How to create pipeline:
./pypipe.py create example.py pipeline - How to draw pipeline to img:
./pypipe.py draw pipeline img.svg - How to run pipeline:
./pypipe.py run-all pipeline