ctlee
Postdoctoral Fellow working on computational biophysics in the Rangamani and Holst groups at UCSD.
University of California, San DiegoSan Diego, CA
Pinned Repositories
bccgc4
BioChemCoRe D3R Grand Challenge 4 Team Repository
BioChemCoRe-2018
Biology and Chemistry Computational Research
casc
Colored Abstract Simplicial Complex Library
cpptraj
Biomolecular simulation trajectory/data analysis.
ddcMD
A fully GPU-accelerated molecular dynamics program for the Martini force field
gamer
Geometry-preserving Adaptive Mesher
langevin-milestoning
1D Langevin Dynamics Simulation Engine
MemSurfer
MemSurfer is a software tool to compute bilayer membrane surfaces.
nglview
Jupyter widget to interactively view molecular structures and trajectories
Stellar
A Tetrahedral Mesh Improvement Program
ctlee's Repositories
ctlee/gamer
Geometry-preserving Adaptive Mesher
ctlee/casc
Colored Abstract Simplicial Complex Library
ctlee/bccgc4
BioChemCoRe D3R Grand Challenge 4 Team Repository
ctlee/BioChemCoRe-2018
Biology and Chemistry Computational Research
ctlee/Stellar
A Tetrahedral Mesh Improvement Program
ctlee/cpptraj
Biomolecular simulation trajectory/data analysis.
ctlee/ddcMD
A fully GPU-accelerated molecular dynamics program for the Martini force field
ctlee/langevin-milestoning
1D Langevin Dynamics Simulation Engine
ctlee/MemSurfer
MemSurfer is a software tool to compute bilayer membrane surfaces.
ctlee/nglview
Jupyter widget to interactively view molecular structures and trajectories
ctlee/SEEKR
SEEKR is a suite of open-source scripts and tools designed to enable researchers to perform multiscale computation of the kinetics of molecular binding, unbinding, and transport using a combination of molecular dynamics, Brownian dynamics, and milestoning theory.
ctlee/biblib
Simple, faithful BibTeX parser and algorithms for Python 3
ctlee/calculate-bilayer-power-spectrum
ctlee/ctl-phd-thesis
Latex source for CTL's PhD thesis
ctlee/diffusion_autocorrelation
ctlee/gamer_tutorials
ctlee/geometry-central
A general-purpose library for applied geometry
ctlee/Mem3DG
3-D computational model for lipid membrane
ctlee/membrane-curvature
Mirror of https://github.com/ctlee/membrane-spectral-analysis for legacy purposes
ctlee/membrane-curvature-mda
MDAnalysis tool to calculate membrane curvature.
ctlee/membrane-spectral-analysis
Compute fluctuation spectra of biological membranes
ctlee/netcdf-cxx4
Official GitHub repository for netCDF-C++ libraries and utilities.
ctlee/pymem3dg-feedstock
A conda-smithy repository for pymem3dg.
ctlee/pypoisson
Poisson Surface Reconstruction Python Binding
ctlee/SSCP_2018
ctlee/stubs
ctlee/swc_mesher
Creates a Blender Object from an SWC formatted file