ctmrbio/stag-mwc

Make StaG-mwc Snakemake workflow standards compliant

Closed this issue · 3 comments

boulund commented

https://snakemake.github.io/snakemake-workflow-catalog?rules=true

Major points to fix:

  • Move workflow into workflow subfolder
  • Create config folder and create config/README.md with instructions on how to fill out the config file
  • .snakemake-workflow-catalog.yaml in root
boulund commented

Possibly also add linting with snakemake --lint as a Github Action. Though we must ignore irrelevant warnings (e.g. /#.*/d in the metaphlan rules).

boulund commented

The main points have been handled and are soon merged to develop for the upcoming 0.6 release
#205