Pinned Repositories
bia-binder
Continuous deployment for binderhub at the BioImageArchive
basic-gpu-binder
A basic binderised repository with GPU support
benchmark_VAE
Unifying Variational Autoencoder (VAE) implementations in Pytorch (NeurIPS 2022)
bioimage_embed
bioimage_phenotyping
dl4mic
Offline version of ZeroCostDL4Mic, useful for running headless machine learning in microscopy
MMSIM
Software suite (Java plugins) for running a SIM using micromanager.
PhD
pydeconv
Python package for scalable micrograph deconvolution with spatially varying point spread functions
pytorch_tutorial
pyTorch demo(s)
ctr26's Repositories
ctr26/pytorch_tutorial
pyTorch demo(s)
ctr26/bioimage_embed
ctr26/pydeconv
Python package for scalable micrograph deconvolution with spatially varying point spread functions
ctr26/benchmark_VAE
Unifying Variational Autoencoder (VAE) implementations in Pytorch (NeurIPS 2022)
ctr26/bioimage_phenotyping
ctr26/DL4MicEverywhere
Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images
ctr26/dotfiles
ctr26/mask-vae
ctr26/nuclear_phenotyping
ctr26/torch-em
Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.
ctr26/bia-agent
BioImage Archive local submission assistant
ctr26/bia-bmz-integration
ctr26/bia-integrator
ctr26/bioimage_embed-old-
ctr26/gpt-migrate
Easily migrate your codebase from one framework or language to another.
ctr26/hypha-helm-charts
ctr26/hypha-k8s-eks
ctr26/KymoButler
A software package that analyses (particle) kymographs
ctr26/LIVECell
ctr26/microscopeimagequality
ctr26/mordred
a molecular descriptor calculator
ctr26/napari
napari: a fast, interactive, multi-dimensional image viewer for python
ctr26/pycytominer
Python package for processing image-based profiling data
ctr26/richardson_lucy_early_stopping
ctr26/scientific-python-template
ctr26/scipy
SciPy library main repository
ctr26/spec-bioimage-io
Specification for the bioimage.io model description file.
ctr26/vision
Datasets, Transforms and Models specific to Computer Vision
ctr26/voxel2mesh
Voxel2Mesh: 3D Mesh Model Generation from Volumetric Data
ctr26/ZeroCostDL4Mic
ZeroCostDL4Mic: A Google Colab based no-cost toolbox to explore Deep-Learning in Microscopy