Pinned Repositories
abPOA
abPOA: an SIMD-based C library for fast partial order alignment using adaptive band
bcftools
This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html
benchmarking_SV_publication
Updated figures for "A benchmarking of WGS-based structural variant callers" paper
bioconda-recipes
Conda recipes for the bioconda channel.
CodeAxe
Model initially described in "Saunders CT, Green P. Insights from modeling protein evolution with context-dependent mutation and asymmetric amino acid selection."
cxx
Safe interop between Rust and C++
memusg
A 'time'-like utility for Unix that measures peak memory usage
svtools
Tools for processing and analyzing structural variants.
vcf4sv
vcflib
a simple C++ library for parsing and manipulating VCF files, + many command-line utilities
ctsa's Repositories
ctsa/bcftools
This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html
ctsa/abPOA
abPOA: an SIMD-based C library for fast partial order alignment using adaptive band
ctsa/benchmarking_SV_publication
Updated figures for "A benchmarking of WGS-based structural variant callers" paper
ctsa/bioconda-recipes
Conda recipes for the bioconda channel.
ctsa/CodeAxe
Model initially described in "Saunders CT, Green P. Insights from modeling protein evolution with context-dependent mutation and asymmetric amino acid selection."
ctsa/cxx
Safe interop between Rust and C++
ctsa/detect_crt_static
ctsa/error-stack-demo
ctsa/ExpansionHunter
A tool for estimating repeat sizes
ctsa/homebrew-science
:microscope: Scientific formulae for the Homebrew package manager
ctsa/hts-specs
Specifications of SAM/BAM and related high-throughput sequencing file formats
ctsa/hap-eval
A VCF comparison engine for structual variant benchmarking
ctsa/htslib
C library for high-throughput sequencing data formats
ctsa/igv
Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations
ctsa/lua-filters
A collection of lua filters for pandoc
ctsa/manta
Structural variant and indel caller for mapped sequencing data
ctsa/minimal_cxx
Minimal demonstration of cxx static build issue
ctsa/Platinum-Pedigree-Inheritance
Haplotype inheritance filtering of genetic variation
ctsa/pyflow
A lightweight parallel task engine
ctsa/r4ds
R for data science: a book
ctsa/rs-sandbox
ctsa/rust-htslib
This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.
ctsa/rust-libbigwig
Limited rust API to libBigWig for writing bigwig files.
ctsa/rust-wfa2
Rust binding for WFA2-lib
ctsa/sml_galign
Supporting ortholog scripts from "Saunders CT, Green P. Insights from modeling protein evolution with context-dependent mutation and asymmetric amino acid selection."
ctsa/spoa-rs
A rust wrapper for the spoa C++ partial order alignment library
ctsa/strelka
Strelka2 germline and somatic small variant caller
ctsa/tflite-rs
ctsa/truvari
Structural variant toolkit for VCFs
ctsa/WFA2-lib
WFA2-lib: Wavefront alignment algorithm library v2