cudmore
Neuroscientist merging biology and technology
University of California at DavisDavis, California
Pinned Repositories
bImPy
A multi-dimensional image viewer and annotation tool
brightest-path-lib
Path-finding algorithms to find the brightest path between points in an image.
homecage
Home cage surveillance
iot-fall-2023
UC Davis Freshman Seminar
pie
A Raspberry Pi Controlled Experiment (PiE). See documentation at https://cudmore.github.io/pie-doc
pie-analysis
PyMapManager
Longitudinal image analysis with online editing and sharing.
SanPy
SanPy is software for whole-cell current clamp analysis.
treadmill
Run A Treadmill on an Arduino using Flask+Python+Javascript+Platformio
triggercamera
A Raspberry Pi camera that can be triggered to record video during a behavioral experiment.
cudmore's Repositories
cudmore/SanPy
SanPy is software for whole-cell current clamp analysis.
cudmore/PyMapManager
Longitudinal image analysis with online editing and sharing.
cudmore/bImPy
A multi-dimensional image viewer and annotation tool
cudmore/brightest-path-lib
Path-finding algorithms to find the brightest path between points in an image.
cudmore/pie
A Raspberry Pi Controlled Experiment (PiE). See documentation at https://cudmore.github.io/pie-doc
cudmore/iot-winter-2022
A class on the IoT where we both learn about it and build our our.
cudmore/iot-fall-2023
UC Davis Freshman Seminar
cudmore/pie-analysis
cudmore/protocols
Collection of lab protocols
cudmore/Adafruit_IO_Arduino
Arduino library to access Adafruit IO from WiFi, cellular, and ethernet modules.
cudmore/analyze-flow
Blood flow analysis from line scans
cudmore/bImPy-Docs
Documentation for bImPy
cudmore/cudmore.github.io
This is a blog by Robert Cudmore
cudmore/iotserver
cudmore/lindensutter
How to manual for Linden Sutterm 2P microscope
cudmore/load-heka-python
Load HEKA .dat files into python
cudmore/napari
napari: a fast, interactive, multi-dimensional image viewer for python
cudmore/napari-dapi-ring-analysis
cudmore/napari-mm
Napari plugin to load and visualize 3D image time series saved by Map Manager
cudmore/pie-doc
PiE server documentation. Browse this documentation at https://cudmore.github.io/pie-doc
cudmore/pyABF
A Python interface for ABF files
cudmore/pyinstaller
Freeze (package) Python programs into stand-alone executables
cudmore/python_app_mac_app_store
cudmore trying to distribute a macOS app and failing
cudmore/read-roi
Read ROI files .zip or .roi generated with ImageJ.
cudmore/saNode
saNode image analysis
cudmore/SanPy-Dash
SanPy-Dash
cudmore/sanpy-data
SanPy Data
cudmore/SanPy-Docs
cudmore/ShapeAnalysisPlugin
For user documentation, see: https://cudmore.github.io/ShapeAnalysisPlugin/
cudmore/smMicrotubule
Smooth Muscle Microtubule Analysis