Pinned Repositories
IlluminaSnakemake
A pipeline for processing raw Illumina reads to draft assemblies and annotations.
TotalRNA-Snakemake
A pipeline for TotalRNA analysis
BALCONY
R package: BALCONY (Better ALignment CONsensus analYsis)
barc-stonks
A BaRC event app to regulate drink prices
BiRC-AiB-Projects
currocam.github.io
Portfolio quarto blog
genomic-offset-thyme
Prediction of maladaptation from ecological and genomic data using genomic offsets
HMMERutils
A bunch of convenient functions to search for homologous sequences using the HMMER API, annotate them taxonomically, calculate physicochemical properties and facilitate exploratory analysis of homologous sequence data.
speedytree
Canonical and RapidNJ implementations of Neighbor-joining in Rust
TheOffice
Natural Language Processing with Python for The Office
currocam's Repositories
currocam/HMMERutils
A bunch of convenient functions to search for homologous sequences using the HMMER API, annotate them taxonomically, calculate physicochemical properties and facilitate exploratory analysis of homologous sequence data.
currocam/speedytree
Canonical and RapidNJ implementations of Neighbor-joining in Rust
currocam/barc-stonks
A BaRC event app to regulate drink prices
currocam/BiRC-AiB-Projects
currocam/currocam.github.io
Portfolio quarto blog
currocam/BALCONY
R package: BALCONY (Better ALignment CONsensus analYsis)
currocam/BiRC-Thyme
A chromosome-level assembly of Thymus vulgaris using Homology-Based scaffolding
currocam/CoMW
Comparative Metatranscriptomics Workflow
currocam/EnvironmentalSciencesAarhus-2022
currocam/genomic-offset-thyme
Prediction of maladaptation from ecological and genomic data using genomic offsets
currocam/genomic-offsets
Implementation of popular genomic offset statistics
currocam/Java_Eventex_RosalingProblems
Trabajo final del Curso de Java de Eventex 2022.
currocam/NanoCLUST
NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads
currocam/processing-local-alignments-rust
Processing local alignments
currocam/snakemake-wrappers
This is the development home of the Snakemake wrapper repository, see
currocam/stat_rethinking_2024
currocam/STRESS-docker
A Docker image from which to use STRESS, a framework for identifying potential allosteric residues
currocam/TotalRNA-Snakemake
A pipeline for TotalRNA analysis
currocam/BiG-SCAPE
Similarity networks of biosynthetic gene clusters
currocam/BiRC-Gaussian-graphical-models
currocam/demografr
Fast and simple simulation-based population genetic inference in R
currocam/GenomicOffsets.jl
Genomic offset statistics
currocam/JuliaRosalind
currocam/jupyter-ncldv-markersearch
currocam/metarib-docker
A docker image for MetaRib
currocam/microbial-network-inference
A project about the reliability of learning Gaussian graphical models from microbial abundances
currocam/rustyphylotyper
currocam/SLiM
SLiM is a genetically explicit forward simulation software package for population genetics and evolutionary biology. It is highly flexible, with a built-in scripting language, and has a cross-platform graphical modeling environment called SLiMgui.
currocam/SLiM-CPH-2024
currocam/tskit
Population-scale genomics