Pinned Repositories
AFSC_Spatio-temporal_Workshop
Repository of laboratory materials for the January-2018 NOAA Alaska Fisheries Science Center workshop on spatio-temporal models presented by Jim Thorson (NWFSC) and Curry Cunningham (AFSC).
AFSC_Survey_Uncertainty
Repository for analyses of NOAA Alaska Fisheries Science Center groundfish survey uncertainty, effort, and statistical methods.
AFSC_VAST_Evaluation
Repository for evaluation of VAST package for single and multispecies spatial delta-generalized linear mixed models (delta-GLMM). The purpose of this analysis is to evaluate differences in indices and uncertainty estimates generated by VAST and design-based estimators, for a range of species in the Bering Sea and Gulf of Alaska.
BeringSea-JuvenileChum-Index
Development of a spatiotemporal model-based index for juvenile Chum salmon, fit to northern and southeastern Bering Sea surface trawl data (NOAA-AFSC & ADFG)
Bristol-Bay-Run-Recon
A general run reconstruction model for the commercial sockeye salmon fishery in Bristol Bay, Alaska. This model leverages information from age and genetic composition samples to apportion mixed-stock catches and account for interception among terminal fishing districts.
Cook_Inlet_Chinook
Repository for data, run reconstructions, and analysis of climate drivers for Chinook salmon stocks of Cook Inlet, Alaska.
Example_Repo
Example GitHub Repository for AFS Student Subunit Workshop
geostatistical_delta-GLMM
Tool for geostatistical analysis of survey data, for use when estimating an index of abundance
Halibut_BioEcon
Biological simulation model for Pacific Halibut
Kuskokwim-Chinook-Preseason-Forecast
Exploration of alternative preseason forecast methods for Kuskokwim River Chinook salmon.
curryc2's Repositories
curryc2/AFSC_VAST_Evaluation
Repository for evaluation of VAST package for single and multispecies spatial delta-generalized linear mixed models (delta-GLMM). The purpose of this analysis is to evaluate differences in indices and uncertainty estimates generated by VAST and design-based estimators, for a range of species in the Bering Sea and Gulf of Alaska.
curryc2/Halibut_BioEcon
Biological simulation model for Pacific Halibut
curryc2/AFSC_Spatio-temporal_Workshop
Repository of laboratory materials for the January-2018 NOAA Alaska Fisheries Science Center workshop on spatio-temporal models presented by Jim Thorson (NWFSC) and Curry Cunningham (AFSC).
curryc2/Cook_Inlet_Chinook
Repository for data, run reconstructions, and analysis of climate drivers for Chinook salmon stocks of Cook Inlet, Alaska.
curryc2/AFSC_Survey_Uncertainty
Repository for analyses of NOAA Alaska Fisheries Science Center groundfish survey uncertainty, effort, and statistical methods.
curryc2/BeringSea-JuvenileChum-Index
Development of a spatiotemporal model-based index for juvenile Chum salmon, fit to northern and southeastern Bering Sea surface trawl data (NOAA-AFSC & ADFG)
curryc2/Bristol-Bay-Run-Recon
A general run reconstruction model for the commercial sockeye salmon fishery in Bristol Bay, Alaska. This model leverages information from age and genetic composition samples to apportion mixed-stock catches and account for interception among terminal fishing districts.
curryc2/Example_Repo
Example GitHub Repository for AFS Student Subunit Workshop
curryc2/geostatistical_delta-GLMM
Tool for geostatistical analysis of survey data, for use when estimating an index of abundance
curryc2/Kuskokwim-Chinook-Preseason-Forecast
Exploration of alternative preseason forecast methods for Kuskokwim River Chinook salmon.
curryc2/MESAexample
Example repository for AFSC MESA meeting
curryc2/NCEAS_salmon_size_DFA
Example code for NCEAS meeting, showing methods for implementing Dynamic Factor Analysis using both EM and Bayesian methods.
curryc2/NCEAS_salmon_size_GAMM
Generalized additive mixed models for evaluation of changes in samon size at age
curryc2/Yukon_Chinook_Bayes
Bayesian stage-structured assessment model for Yukon River Chinook salmon.